Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 6e-13 seq2 89.7 6e-13 >seq7 Length=22269817 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 8165169 GTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 8165228 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 8165229 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 8165288 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 130205 || ||||| | | | ||| || |||| | | | || | ||| || | || Sbjct 8165289 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 8165344 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 130265 ||||| || || || ||| || || || |||| ||| || | |||||| |||| Sbjct 8165345 CCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCT 8165404 Query 130266 TTTCTGATGGA-TCTTTGATGTACTTATCTA 130295 |||| | ||| ||||||||||| | |||| Sbjct 8165405 TTTC-GTCGGAGTCTTTGATGTAAGTTTCTA 8165434 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 6e-13 Identities = 228/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 8162443 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 8162502 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 8162503 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 8162560 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGC 14289 || | || ||||| ||||||||||| | || || || || || ||| || || | Sbjct 8162561 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 8162620 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 8162621 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 8162679 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | | | || | || || || || | |||||| || || || ||| || | Sbjct 8162680 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 8162738 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 | |||||||| || ||||| || ||||||| |||| Sbjct 8162739 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 8162778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423573418240