Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq3 102 1e-16 seq6 95.1 1e-14 seq1 89.7 6e-13 >seq2 Length=53008150 Score = 138 bits (152), Expect = 1e-27 Identities = 311/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 8162425 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 8162484 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 8162485 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 8162542 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 8162543 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 8162602 Query 9734 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 8162603 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 8162661 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 8162662 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 8162720 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 8162721 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 8162780 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 |||||| || ||| | |||||||||| | |||||| || ||||| | || Sbjct 8162781 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTT 8162840 Query 9972 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 | || || | ||| || | |||| || ||||||| Sbjct 8162841 CCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 8162880 >seq3 Length=30666748 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||| | ||||||| ||||||||| ||||||||||||||| | || ||| | Sbjct 26155021 AGAGATTTTGACTTTGATTATTTTGGCTTCAAAACCCTTGAGAGGTCGTACCTTTTGAAG 26155080 Query 104198 CTCGATGGT-GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | ||| | |||| ||||| ||||||| ||| | || | | ||||| Sbjct 26155081 ATGGACAGTAGAGTTG-TAGAAAGGCCACAACACATGTTGATGAGGGTTTCTGTTGGTAT 26155139 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| || |||| |||||||| || | |||||| | |||||| || | ||| Sbjct 26155140 TCACAAAGATGACACTGATTCTGCTCTGAAAACATACCATTTGATGTCTCAGCATTGGTT 26155199 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 |||||| || || |||||||| |||||||| ||||| ||| ||||| Sbjct 26155200 CATTCATGCTACTCCAACCCTTTTCAATGCAGGTACTCCACAGCCCCA 26155247 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/217 (70%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 29776319 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 29776262 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 29776261 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 29776202 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || ||| || || | |||| ||| | ||||| ||| || | ||||| || Sbjct 29776201 CACGGTGCCTT--CGATTTGGCCTTCTCAAACAAATCCCT--CACTCTGGATGCGCCAAC 29776146 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 29776145 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 29776109 >seq6 Length=23636167 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||| ||||| ||||||||||||||| | ||| || | || || | | || Sbjct 11060646 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 11060705 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| | |||| || ||| | ||||| ||| | || | || || ||||| ||| Sbjct 11060706 AAGGTTG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACAAGGA 11060764 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || |||||||||| | | |||||| | | |||||||||| | ||||| || || Sbjct 11060765 TGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCCATGC 11060824 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || || || || |||||||| || ||||| ||||| Sbjct 11060825 ATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 11060863 >seq1 Length=32082701 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| |||||||||| |||| | ||| |||| || | | | | | Sbjct 28519362 GACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAGGTC-CAAGG 28519420 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 ||| | |||| || || | ||||| ||| | || || | || ||||| || Sbjct 28519421 AAAAGTTG-TAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGATTCACAAGG 28519479 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | ||||||||||||| | | | |||||| | | |||||| ||| | ||| | || | Sbjct 28519480 ATGACATTGATTCTGCCATCAAAACATACCATATGATGTCTCAACGATGGTTTACCCATG 28519539 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || | || || || || |||||||| ||||||||| |||| Sbjct 28519540 CATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCA 28519579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249834696960