Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq7 107 2e-18 >seq1 Length=32082701 Score = 150 bits (166), Expect = 2e-31 Identities = 380/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 31016110 TTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 31016169 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| ||||||| ||| ||| | | | | ||||| || | || Sbjct 31016170 ACGGCGGAGGAGGTTGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACGGCCG 31016227 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| | || || ||||||||||| || |||||||| || Sbjct 31016228 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 31016287 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | | || || || |||| | ||||||| || | |||| Sbjct 31016288 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAATCCAAGTCTCCGAGGCGCGTGCCTTCT 31016347 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 31016348 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 31016406 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGAC-GTCCC 59916 | || | || | | || || ||| || | | | || || ||| | || || || || Sbjct 31016407 ACGTACATAAAAAACTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACTGTGCC 31016465 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| |||| || || |||||| | | ||||| || || |||| |||| Sbjct 31016466 GTGC-GTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 31016522 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || |||||||| ||| ||||| Sbjct 31016523 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTG 31016582 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | ||||||||||| | ||||| |||||||| Sbjct 31016583 CGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCT 31016642 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || || ||||| Sbjct 31016643 AATCTCGCGAGATGAAGGACTCCA 31016666 >seq7 Length=22269817 Score = 107 bits (118), Expect = 2e-18 Identities = 491/758 (65%), Gaps = 22/758 (3%) Strand=Plus/Minus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||| | || || ||||||||||| || || || || || Sbjct 8165609 GACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 8165550 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 8165549 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 8165490 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || |||| ||||||||||| | ||||||||| | | || Sbjct 8165489 TACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 8165431 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| || | || || ||| |||| || | ||||| |||||| | || Sbjct 8165430 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 8165371 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 8165370 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 8165314 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 8165313 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 8165254 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 8165253 CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 8165194 Query 60095 GATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATT 60154 ||| || || || ||||| ||||| || || || ||| | | | | || |||| Sbjct 8165193 GATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGC-GTGCCTGT-TGTACA-GTTTATT 8165137 Query 60155 G-GAAAAATGCCCTTCCAAG-GATA-TTCACAAGATTGTTCAGTGGGCTTGTGAAG-TGG 60210 | | | | || | | | || | | | | | || || ||| ||| || | | Sbjct 8165136 GAGGACGAAGCTAAGCGAGGAGAGAGTGAAGGCGTTAGTGAAGGAGGC-GGTGGAGATAG 8165078 Query 60211 AGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA- 60269 |||| ||||| | || ||||| || ||| | | || ||| | ||||||| Sbjct 8165077 AGAGAGAGTTTGTGTGCGATGCGCTGCCGTGCGCGTTGGTGGGGATGAA---TGGAGAAT 8165021 Query 60270 --ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGAC 60327 |||| |||||||| ||||||||||||| | | ||| | |||| | || Sbjct 8165020 TGATGAGTCAGTACATAGAGTTTGTCGCGGATAGATTGTTGGGTGCGCTTGGGTACGGGA 8164961 Query 60328 CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 | ||||| ||| || ||||| || ||||||||| |||||| | ||||||||| Sbjct 8164960 AGCTGTACGGTGTGGGGAATCCTTTTGATTGGATGGAGCTGATCTCGCTCCAAGGGAAGA 8164901 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 | || |||||||| ||| | || ||||| ||| |||| Sbjct 8164900 CTAATTTCTTTGAAAAGAGAGTTGGGGAATATCAAAAG 8164863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514487733760