Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq1504 401 1e-107 >seq1504 Length=2444 Score = 401 bits (444), Expect = 1e-107 Identities = 1167/1741 (67%), Gaps = 103/1741 (6%) Strand=Plus/Plus Query 5013 AGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATG 5072 |||||||| | |||||||| |||| | |||| ||||| | || | ||||||||| Sbjct 702 AGGCCGATGGCGTTGCGGTGTTCTTCCATCAGGTCAACGCCATCAACAATTTCAATCATG 761 Query 5073 TTGATGGTG-TCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAGGTGCA 5131 ||||| |||| ||| |||| ||| |||| || |||||| |||| || Sbjct 762 TTGATTCACATCGACCTCGTACAGCACCTC-CCGTTAATGGTCAGCTTCGCATAGCTGTT 820 Query 5132 GACCACGGAGATTTTCGACTCGGTGTCTTCTC-CCTGTTTACC-CTCGCCGGTGTCGATT 5189 || | || ||| | | | | |||| || |||| || |||||||| || | Sbjct 821 AACGCTGCTGACTTTGG--TGGTATTGCTCTCGCCGGTTTTCCACTCGCCGGAATCCACC 878 Query 5190 TCTTTCTGACGTCCACGC-ATGACCACCTCGACGGCC----ACCGTTTCGCCGGTATCGT 5244 ||||| || ||||| || | |||| ||| |||||| ||| |||||||| || | Sbjct 879 TCTTTGTGGCGTCCGCGGTACAACCAGCTCAACGGCCTGCAACC---TCGCCGGTGTCAT 935 Query 5245 CGCGCTGGTAAGAGCCTGCAAAACGAATCGGCACGGCATCCACACCGG--TTGCG----G 5298 |||||||| |||||| | || || ||| ||||| | ||||| || |||| | Sbjct 936 CGCGCTGGATAGAGCCGGTGAAGCGCATCTGCACGCCGTCCACCGTGGCCTTGCCATCTG 995 Query 5299 CGTAAAGCTCCCAGATAACCGAATCCGGGAAGCCACCCAGCGACCACTCCATTGACAGCG 5358 |||| ||| | | || | | || || | | | ||| || ||| | Sbjct 996 TTTAAA-----CAGC--AGTGCCTCAGTG---CCGCCGATGGTCATTTCCGTTC-CAGTG 1044 Query 5359 CATCGTCATCAAGGCCGAGGTC--TACCGGTGCGCTG--CCGTTCATCCCCGCACCGCGA 5414 | | ||||| || || || || ||||| ||| ||| ||| |||| |||||| Sbjct 1045 CGCCATCATCCAGCCCCAGATCGATACCGA----CTGAACCGGGCATAGCCGCCCCGCGA 1100 Query 5415 TAGTTTTCGAGCTTACGGGTCAGTTTTGGCAGCGTGACGGACTTTGCAACGCCC-TGATA 5473 ||||| || ||||| |||| | ||| ||||| |||||||| | |||| |||| | | Sbjct 1101 TAGTTCTCAAGCTTGCGGGAAAATTTCGGCAGGGTGACGGATTCAGCAATGCCCATCAGT 1160 Query 5474 GCTGTAGCCGTTCAGAAAGACGTTCATTAACTTGAG-TTTGCGCGGCATTGCCATCGGTC 5532 | | | |||| |||||| ||||| || || |||||| || | ||||| |||| Sbjct 1161 GTTACCGGCGTT--GAAAGATGTTCAGGTGTTTTAGCTTTGCGTGGTAAGGCCATGGGTC 1218 Query 5533 AGGCTCCTTAATTGCTTTTAACCGAAGTGACCAGATTTGCCAGGTATTTATCGGTAATAC 5592 | ||||| ||| ||| || ||| | || ||||||| || || || | Sbjct 1219 ---CCCCTTA--TGCGCTTACGCGG-GTGGTGAAATCCACCAGGTAACGGTCAGTGATGC 1272 Query 5593 GCTGGCGCAGGGTCAGGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAGTCGATATACA 5652 |||||||||| |||||||||| || || ||||| || |||||||| |||||||| | | Sbjct 1273 GCTGGCGCAGCATCAGGTTTTCCAGCGGCGGCACTGGCGTATAGTCGTAGTCGATCCAGA 1332 Query 5653 GTTTTCCGGCCTTGAGGGTT-TCCGCATCGTTGGATTCTTCGCTGAA-CCAGCAGGTCGC 5710 |||| ||||| || |||| | || ||||| | || | || |||||| || | Sbjct 1333 GTTTCCCGGCTTTCAGGGCTGTCTTTGTCGTTA-ACGCTGTCATCAATCCAGCAA-TCAC 1390 Query 5711 ATCC-ACGATATAGCCGTTTGTTTTCAGCTCACGGAATTTGGCATTGATGCCGTCAACGA 5769 || | || ||||| | || ||| || | |||||| ||| || || | | Sbjct 1391 CGCCGATGAGGTAGCCCTGA-TTACCAGGCTGCGCATTTTGGCGCGGATACCTTCGATAA 1449 Query 5770 TGTCGCGAATCAGCGTTGCGGTGATGGGCTTGTCCACCGCCCACATATGCGCCTCAGCCA 5829 | ||||| ||||| | | | | ||| | ||||||||||||||||| |||| |||| Sbjct 1450 TATCGCGGGCCAGCGACGGGTTAAGCGGCATATCCACCGCCCACATATGGCCCTCTGCCA 1509 Query 5830 TCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAGCGG-GTCA 5888 | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1510 TGGTGTCAGCCAGTACCTGCGCGGTGCGGGTGTAGTTTTCAAACTGGAACAGCGGATTCA 1569 Query 5889 TCAGAGCAGGTA-CGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATCAGCGTAGTGAC 5947 ||| |||| | ||| ||||||||| |||||||| || | |||| || ||||| Sbjct 1570 TCA-CTCAGGCAGCGGGAACCCCAGAAGCGGAAACCATCCTTCCTGATCAAGGTGGTGAC 1628 Query 5948 GCCTGACTCGTTAAGCAGGTCAGCATC-GGTGCCGGACTCCTGCAAATCCCAGAATACAG 6006 | | || ||| ||||| | ||||| | |||||| ||||||| |||||||| ||| Sbjct 1629 GTCGTTCTGGTTCAGCAGTCCGGCATCAGTTGCCGG-GTCCTGCAGATCCCAGA--ACAC 1685 Query 6007 ATGCGCTG--ATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTTTTATGCCAGCC 6064 || ||| | | |||||| || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 1686 ATCCGCAGACAAGCCGGTTACGCCGTTGACGCC-ACGTTAGACAGGGTTTTGTGCCAGCC 1744 Query 6065 CTGCTCCTGGTCGA-TTTTAGCGCGCAGACCCAGCGCACGGGCGGTGGCATACGCGGTGG 6123 | || ||||| ||||||||||||| || || || ||||| || || || ||||| | Sbjct 1745 GGTTTGCTCGTCGATTTTTAGCGCGCAG-CCAAGGGCGCGGGC-GTAGCGTA-GCGGTCG 1801 Query 6124 CGGTGGTACTGTTG-ACCGTATCCCATGCGAGGAAATCCGGCCAGATGACCATCAGCTCA 6182 | | ||| | ||||| || | | ||| || |||||||| | ||| ||| Sbjct 1802 C-ATCCGCCTGCAGCACCGTGTCAAAGTTTATGAAGTCAGGCCAGATAATCATTCCTTCA 1860 Query 6183 CGCTGGCTGAAATTCTGGCGGTAGGCTTTCACCTCGGAAATGGTTTTACAGCCCCATGCG 6242 ||||||||||| || | |||||| | || | | | |||||||||||| | || Sbjct 1861 CGCTGGCTGAAGTTGTCGCGGTAAGTGATCGCTCTTGCCACGGTTTTACAGCCGTAAGCT 1920 Query 6243 CTGATATACCCGAAAGCGCGCAACTTCTGACACACTGATGCCAGTGCAACTGCCACCTCT 6302 |||||| | || || |||| |||| ||| | | ||| || | || | Sbjct 1921 GACATATACGCAAAGGCCCGCAGGCTCTGCGCCAC-GCTCACAGCTCAGTGGATACGGCC 1979 Query 6303 TTGGTGTCCAGTCCCGGTACGCCG-AGAATACGCGGTTTAACACCGGTTACCGACTCCGC 6361 | || || | ||||| |||||| ||||| |||||||| || || | | ||||| ||| Sbjct 1980 TGCGTATCATGCCCCGGCACGCCGAAGAATGCGCGGTTTCACGCCAGCT-GCGACTGCGC 2038 Query 6362 CGCCAGCAGGGCTTTCAGTCCGGTGTACTGACCGTTTTCGTCGGT---GGTGCCGATGAT 6418 | || || || |||| ||||| | || |||| ||| | || | |||||| || Sbjct 2039 GGAAAGTAGCGCCTTCATGCCGGTTTTCTTACCG---TCGGCAGTCACGCCGCCGATAAT 2095 Query 6419 ATTGGAAACGGTCTGCGCGAGTTTCGTTTCCTCGTCGTCGCCGGTGCCGTCTTCCACACG 6478 ||| || ||| | ||| || ||||| ||| | | || || Sbjct 2096 ATTTGAGGTGGTTTCCGC---TTCGGTTTC---------------GCCCTGGGCAACGCG 2137 Query 6479 CACAACAACGGTGACCGG-TTTTGACTGGTCGGCGATGGCCTGCAACGCTGCCGCCAGCG 6537 ||| || |||||||| || ||||| |||||| ||||| || | || | ||||||| Sbjct 2138 CACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGATCGCGTCCAGTGAGCGGGCCAGCG 2197 Query 6538 TGCCTTTTTTACCGGCCTTTGCAATTGCGCTCTGCACATTGGTAATCAGCACC-GGTTTA 6596 | || | || || || | | ||| || | |||| ||||| ||| ||| || ||| Sbjct 2198 TACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACATCGGTAAGCAGTACCAGGCTTA 2257 Query 6597 TTGAGGGGGAAGATTTCCGCATCCGCATCGCTGGCCGTGCAGACCAAGCCGACAATGGCA 6656 ||||| ||||| || ||||| ||||| | | ||||| |||| ||| ||||| || Sbjct 2258 TTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGTGCACACCATGCCCACAATCGCC 2317 Query 6657 GTGGATACGGTGGAAATGACGCGGGTGCCGTCGTTAA--TCTCCAGCACCTGCACGCCGT 6714 ||| || || | || ||||||||||||||||| ||| || || | ||||||||| Sbjct 2318 GTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAACTTCTACAACAGC-GCACGCCGT 2376 Query 6715 G 6715 | Sbjct 2377 G 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104436534730176