Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq1504 389 7e-104 >seq1504 Length=2444 Score = 389 bits (430), Expect = 7e-104 Identities = 910/1335 (68%), Gaps = 70/1335 (5%) Strand=Plus/Minus Query 22524 CACGGCGTGCAGGTGCTGGAGA--TTAACGACGGCACCCGCGTCATTTCCACCGTATCCA 22581 |||||||||| | || || ||| ||||||||||||||||| || | || || || Sbjct 2377 CACGGCGTGC-GCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCA 2319 Query 22582 CTGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAACCTTCCCCCTCA 22641 | || ||||| |||||||| ||||| | | ||||| ||||| | ||||| |||| Sbjct 2318 CGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCA 2259 Query 22642 ATAAACCTG-TGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGTAAAAAAGGC 22700 |||| |||| | ||| ||||| |||| | || ||| | | || || || | || Sbjct 2258 ATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGT 2199 Query 22701 ACTCTGGCGGCATCGTTGCAGGCCATCGCCGACCAGTCAAAA-CCGGTCACAGTTGTCGT 22759 || ||||| || || | || ||||| |||||| ||||| || ||||| || || || Sbjct 2198 ACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGT 2139 Query 22760 GCGTGTGGAAGACGGCACCGGCGACGACGAGGAAACGAAACTCGCGCAGACCGTTTCCAA 22819 ||| || | | ||| ||||| || ||| | ||| || || Sbjct 2138 GCGCGTTGCCCAGGGC---------------GAAACCGAA---GCGGAAACCACCTCAAA 2097 Query 22820 TATCATCGGCACC---ACCGACGAAAACGGTCAGTACACCGGACTGAAAGCCCTGCTGGC 22876 ||| |||||| | || | ||| |||| || | ||||| |||| || || || | Sbjct 2096 TATTATCGGCGGCGTGACTGCCGA---CGGTAAGAAAACCGGCATGAAGGCGCTACTTTC 2040 Query 22877 GGCAGAGTCGGTAACCGGTGTTAAACCGCGTATTCT-CGGAGTGCCGGGACTGGACACCA 22935 || ||||| | | || || |||||||| ||||| ||| |||||||| | || || Sbjct 2039 CGCGCAGTCGC-AGCTGGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGC 1981 Query 22936 AAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGGGTATATCA 22995 | | || | || ||| | | || |||| ||||| || || | |||||| Sbjct 1980 AGGCCGTATCCACTGAGCTGTGAGC-GTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGT 1922 Query 22996 GCGCATGGGGCTGTAAAACCATTTCCGAGGTGAAAGCCTACCGTCAGAATTTCAGCCAGC 23055 || | |||||||||||| | | | || | ||||| | || |||||||||| Sbjct 1921 CAGCTTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGC 1862 Query 23056 GTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGT----CACGAGTACC 23111 |||| ||| | |||||||| || ||| | | || ||||| || | | | Sbjct 1861 GTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGAT- 1803 Query 23112 ACCGCCACCGCGTATGCCACTGCCCGTGCGCTGGGACTGCGTGCCAAAA-TCGACCAGGA 23170 || ||||| || || || ||||| || || || ||||| || |||| ||||| || | Sbjct 1802 ---GCGACCGC-TACGCTAC-GCCCGCGCCCTTGG-CTGCGCGCTAAAAATCGACGAGCA 1749 Query 23171 GCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAACGGTGTTACCGGCAT--CAGC 23228 |||||||| ||||| ||||| ||||| || || ||||| || |||||| | | || Sbjct 1748 AACCGGCTGGCACAAAACCCTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGC 1690 Query 23229 GCATCTGTATTCTGGGATTTGCAGGAGTCCGGCACC-GATGCTGACCTGCTGAACGAGTC 23287 | || ||| |||||||| ||||||| |||||| | ||||| | ||||||||| || Sbjct 1689 GGATGTGT--TCTGGGATCTGCAGGAC-CCGGCAACTGATGCCGGACTGCTGAACCAGAA 1633 Query 23288 AGGCGTCACAACGCTGATTCGTCGTGACGGTTTCCGCTTCTGGGGTAACCG-TACCTGCT 23346 | |||||| || |||| | || |||||||||||||||||| ||| | |||| Sbjct 1632 CGACGTCACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG 1573 Query 23347 CTGATGAC-CCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGAC 23405 |||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1572 -TGATGAATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGAC 1514 Query 23406 ACGATGGCTGAGGCGCACATGTGGGCGGTGGACAAGCCCATCACCGCAACGCTGATTCGC 23465 || ||||| |||| || |||||||||||||| | ||| | | | | ||||| ||| Sbjct 1513 ACCATGGCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGC 1454 Query 23466 GACATCGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGT- 23524 || || | || || ||| |||||| | || ||| || | ||||| || | Sbjct 1453 GATATTATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAA-TCAGGGCTACCTCATC 1395 Query 23525 GGATGCGACCTGCTGGTTTAGCGA-AGAATCCAACGATGCGGA-AACCCTCAAGGCCGGA 23582 || | || |||||| || || || | ||||| || | |||| || ||||| Sbjct 1394 GGCGGTGA-TTGCTGGATTGATGACAGCGT-TAACGACAAAGACAGCCCTGAAAGCCGGG 1337 Query 23583 AAACTGTATATCGACTATGACTATACACCGGTGCCTCCTCTCGAAAACCTGACCCTGCGC 23642 ||||| | |||||||| |||||||| || ||||| || || |||||||||| |||||| Sbjct 1336 AAACTCTGGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGC 1277 Query 23643 CAGCGTATCACCGATAAATACCTGGCAAATCTGGTCACCTCGGTTAACAGCAATTAAGGA 23702 ||||| ||||| || ||||||| || | |||| || ||| ||| ||||| Sbjct 1276 CAGCGCATCACTGACCGTTACCTGGTGGATTTCACCACC-CGCGTAAGCGCA--TAAGGG 1220 Query 23703 GCCTGACCGATGGCAATGCCGCGCAAA-CTCAAGTTAATGAACGTCTTTCTGAACGGCTA 23761 | |||| ||||| | || |||||| || || ||||| |||||| |||| | Sbjct 1219 G---GACCCATGGCCTTACCACGCAAAGCTAAAACACCTGAACATCTTTC--AACGCCGG 1165 Query 23762 CAGCTATCA-GGGCGTTGCAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTCGAAA 23820 | | | | |||| |||| | |||||||| ||||| ||| | |||| ||||| || | Sbjct 1164 TAACACTGATGGGCATTGCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGA 1105 Query 23821 ACTATCGCGGTGCGG 23835 |||||||||| |||| Sbjct 1104 ACTATCGCGGGGCGG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93435131218752