Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1504 387 3e-103 >seq1504 Length=2444 Score = 387 bits (428), Expect = 3e-103 Identities = 906/1323 (68%), Gaps = 73/1323 (6%) Strand=Plus/Minus Query 13925 GAAATTAATGACGGTACGCGTGTTATTTCCACAGT-AGCGACTGCGGTCGTCGGCATGGT 13983 ||| |||| ||||| || || ||| | || || ||| || ||| | || |||||||| Sbjct 2358 GAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGC-ACGGCGATTGTGGGCATGGT 2300 Query 13984 TTGTACAGCCAGCGATGCAGATGTCACGCTATTTCCCCTCAATGAACC-GGTACTGATTA 14042 || || | | ||||| |||| | | | || || |||||| | || ||||||| ||| Sbjct 2299 GTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTA 2240 Query 14043 CCAATGTGCAAAGTGCCATTGCGAAAGCCGGTAAAAAAGGCACGCTGGCTGCATCACTGC 14102 || |||| | | |||| | ||||| || | || |||||||| |||||| Sbjct 2239 CCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGG 2180 Query 14103 AGGCCATTGCAGACCAGTCAAAA-CCCGTCACTGTTGTTGTACGTGTTG---AGGATGGA 14158 | || || ||||||||| ||||| |||||||| || || || || |||| ||| | | Sbjct 2179 ACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTGCGCGTTGCCCAGGGCGAA 2120 Query 14159 ACCGGCGATGACGAGGAAGCTGCGCTCGCACAGACTGTTTCCAACATTATCGGAGGTACG 14218 |||| | | |||| | ||| || || |||||||| || | Sbjct 2119 ACCG------AAGCGGAAAC--------CACC-------TCAAATATTATCGGCGGCGTG 2081 Query 14219 GATGAGAACGGTAAATACACCGGAATCAAGGCTCTCCTGACCGCTCAGGCCGTCACCGGC 14278 || ||||||| | ||||| || ||||| || || |||| ||| | | | ||| Sbjct 2080 ACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCGCAGTC-GCAGCTGGC 2022 Query 14279 GTCAAGCCGCGTATTCTTGGG-GTGCCGGGGCTGGATACTAAAGAGGTCGCGGTCGCGCT 14337 || || ||||| |||||| || |||||||||| ||||| | | || | | ||| Sbjct 2021 GTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAGCT 1962 Query 14338 TGCGTCGGC-TGCCATTAAGT-TACGTGCATTTGCTTAC--GTCAGCGCGTGGGGATGTA 14393 || || || | || | || || ||||| || |||||| | || |||| Sbjct 1961 ---GTGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCT--TACGGCTGTA 1907 Query 14394 AGACTATTTCCGAAGCGATGGAATATCGTAAAAATTTCAGCCAGCGCGAGCTGATGGTTA 14453 | || | | |||||| || || | || ||||||||||| || ||| ||| Sbjct 1906 AAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTA 1847 Query 14454 TCTGGCCTGATTTCCTCGCATGGGACACAGTGAAAAATACCACCGCAACGGCTTACGCCA 14513 |||||||||| ||| | | ||||| ||| | | || || ||| |||| | Sbjct 1846 TCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGATGCGACCGCT-ACGCTA 1788 Query 14514 CTGCGCGTGCACTCGGCCTGCGTGCTTACA-TCGACCAGACTGTCGGCTGGCACAAAACC 14572 | || || || || ||| |||| ||| | | ||||| || |||||||||||||||| Sbjct 1787 C-GCCCGCGCCCTTGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAACC 1730 Query 14573 CTGTCTAACGTTGGTGTACAGGGAGTTACCGGCAT--CAGCGCCTCAGTGTTCTGGGATT 14630 ||||||||||| || || | || || |||||| | | ||| | |||||||||||| Sbjct 1729 CTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGAT--GTGTTCTGGGATC 1673 Query 14631 TGCAGGCATCCGGCACC-GATGCTGACCTTCTCAACGAGGCCGGGGTTACAACTCTGGTA 14689 |||||| | |||||| | ||||| | || || ||| || || || || || || | Sbjct 1672 TGCAGG-ACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCACCTTGATC 1614 Query 14690 CGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCA-CCTGCTCAGATGAC-CCGCTTTTTC 14747 | ||||| |||||||||||||||||| |||| |||| ||||| ||||| || | Sbjct 1613 AGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAGT-GATGAATCCGCTGTTCC 1555 Query 14748 TGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACA 14807 |||||| ||||||||||| ||||||||||||||||| ||||| ||||| || | || | Sbjct 1554 AGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCATA 1495 Query 14808 TGTGGGCGGTCGATAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCA 14867 |||||||||| |||| ||| ||| | | |||| || || ||| | || || ||| Sbjct 1494 TGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCC 1435 Query 14868 ATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCG 14927 |||||| | ||| ||| || | |||||| || | | |||||| |||||| | | Sbjct 1434 GCGCCAAAATGCGCAGCCTGGTAA-TCAGGGCTACCTCATCGGCGGTGATTGCTGGATTG 1376 Query 14928 ACGAGGAATCG--AACGACAAGGAGA-CCCTGAAAGCCGGGAAACTGTATATCGACTACG 14984 | || | || |||||||| || | ||||||||||||||||||| | |||||||||| Sbjct 1375 ATGA--CAGCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTACG 1318 Query 14985 ACTATACGCCGGTTCCGCCACTGGAGAGCATGACCATGCGCCAGCGTATCACCGATAAAT 15044 |||||||||| || ||||| ||||| | | ||| |||||||||| ||||| || | Sbjct 1317 ACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGTT 1258 Query 15045 ATCTGGTGAATCTGGCCGAATCG-GTCAACAGCTAAGGAGCCTGAAACAACATGGCACTA 15103 | |||||| || | || | || || | | ||||| | || |||||| || Sbjct 1257 ACCTGGTGGATTTCACC-ACCCGCGTAAGCGCATAAGGGG---GA---CCCATGGCCTTA 1205 Query 15104 CCCCGTAAA-CTCAAATACCTGAATAT-GTTCAACGATGGCCTCAGCTACATGGGTGTTG 15161 || || ||| || ||| ||||||| || ||||||| || || || ||||| ||| Sbjct 1204 CCACGCAAAGCTAAAACACCTGAACATCTTTCAACGCCGGTAACA-CT-GATGGGCATTG 1147 Query 15162 TTGAATCCGTAACGTTGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGG-T 15220 ||||||||| || ||||||| | |||||||||| || ||||||||||| ||||| | Sbjct 1146 CTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGCT 1088 Query 15221 ATG 15223 ||| Sbjct 1087 ATG 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95022302871360