Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq2 93.3 3e-14 >seq6 Length=23636167 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||||||||| || || || || || || | || || || ||| Sbjct 4424003 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 4424062 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 4424063 TCCGAC-----ACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGC 4424117 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| || | || |||||||| || ||| | || |||| |||| ||| ||| Sbjct 4424118 CGGACCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCG 4424177 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||||||||| |||||||| |||||||||| Sbjct 4424178 ATTACAACATTCAAAAAGAATCCACTTTGCAT 4424209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 4366045 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 4366104 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 4366105 GACACGATCGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACC 4366162 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 4366163 AGCAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACA 4366222 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||||||| ||| |||||| Sbjct 4366223 ACATCCAAAAAGAATCCACCTTGCAT 4366248 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | || || || || || | || || || ||| || Sbjct 3889100 ATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCC 3889159 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 3889160 GACACGATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCGGACC 3889217 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || |||||||| || | || |||| |||| |||| | ||||||| Sbjct 3889218 AGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACA 3889277 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || | || | ||| | || |||||| Sbjct 3889278 ACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGC 3889327 >seq2 Length=53008150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| || ||||| ||| ||| || | || || || ||| | Sbjct 27084500 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGCTC 27084441 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| |||||| ||||| ||||| ||||| | || || Sbjct 27084440 CGACACCATTGACAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGAC 27084383 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 |||||| || | || |||||||| |||||| | || || | ||||| |||| | || || Sbjct 27084382 CAGCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTG-CAGACTA 27084324 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||| || || || | |||||||| Sbjct 27084323 CAACATCCAGAAGGAATCAACCCTTCATTTGGT 27084291 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||||||| || ||| | || || || || | Sbjct 27127078 ATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCACATTGGAGGTTGAGAGTTCG 27127019 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || || || || || |||| || | Sbjct 27127018 GACACAATTGACAAT--GTGAAGGCTAAGATCCAGGATAAGGAGGGGATTCCCCCAGACC 27126961 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||| ||||||||| | || || | | | | |||| |||||||| Sbjct 27126960 AGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTG-CCGATTAC 27126902 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| ||||| | || | ||| | ||||| || Sbjct 27126901 AACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGG 27126852 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 27127534 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 27127475 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 27127474 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 27127417 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 27127416 AACAGAGGTTAATCTTTGCCGGCAAACAACTCGAAGATGGTCGTACTCTTG-CTGACTAC 27127358 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | |||||||| | ||| | ||||| || Sbjct 27127357 AACATCCAGAAGGAGTCAACCCTTCATTTGGTGCTTCGTCTCCGTGGTGG 27127308 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| || ||| || | || || |||||| || Sbjct 27127762 ATGCAGATCTTTGTAAAAACCCTCACTGGAAAGACTATCACCCTGGAGGTGGAAAGCTCC 27127703 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| || || ||||| | || || | Sbjct 27127702 GACACCATTGACAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACC 27127645 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 ||||| || | || |||||||| |||||| | || || | ||||| |||| | || ||| Sbjct 27127644 AGCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTG-CAGACTAC 27127586 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || || || | |||||||| Sbjct 27127585 AACATCCAGAAGGAATCAACCCTTCATTTGGT 27127554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855877042208