Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq6 98.7 9e-16 seq2 96.9 3e-15 >seq5 Length=49531769 Score = 113 bits (124), Expect = 4e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| || ||||| | ||||| |||| || Sbjct 45288705 CACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTC 45288646 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | || ||| |||||| Sbjct 45288645 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCT 45288587 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 45288586 GGATCTTCGCCTTGA-CGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 45288528 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 45288527 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 45288493 >seq6 Length=23636167 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| ||||| | || |||||| || || || || ||||||||||| Sbjct 3889554 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 3889495 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 3889494 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3889435 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| ||| || | ||| | | | ||| ||| |||||| Sbjct 3889434 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCAC 3889376 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 3889375 CTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 3889328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| ||| || || ||| || || || || ||||| ||||| || | | | Sbjct 4424448 CGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCA 4424389 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| || || |||||||| || ||||| | || || || Sbjct 4424388 TCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGTATCCCT-TCCTT 4424330 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCG 39244 |||| |||||| |||| ||| | || | | || |||| || || |||| | Sbjct 4424329 GTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCGACTTCCAGAG 4424274 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | ||||||||||| ||||| || ||||| ||||| Sbjct 4424273 TGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 4424234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||||||||| || || | || || ||||| Sbjct 3889758 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGGCCATCCTCGAGCTGC 3889699 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || | ||||||||| | || | | |||||||||| ||| || Sbjct 3889698 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTG 3889639 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| ||| |||||| |||| ||||| | || || || Sbjct 3889638 GCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGT 3889580 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||| ||||| Sbjct 3889579 CAACGTCTTGACGAAGATCTGCAT 3889556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || |||||||| | || || |||| || || || || || ||||| Sbjct 4424196 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 4424137 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| || |||| ||| Sbjct 4424136 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 4424078 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||| || | ||||| | || || || || ||||| || Sbjct 4424077 GTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCAC 4424018 Query 39273 AAAGATTTGCATCTTTAC 39290 ||| || |||||||| || Sbjct 4424017 AAATATCTGCATCTTCAC 4424000 >seq2 Length=53008150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| ||||| || | || ||| Sbjct 27088144 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 27088203 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || ||||| | || || |||||| Sbjct 27088204 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCT-TCCTTGTCCTG 27088262 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | |||||| || || || | || || |||| Sbjct 27088263 GATCTTAGCTTTGACATTATCGATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 27088322 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || || |||||||||||||||| Sbjct 27088323 TCCGGTGAGAGTCTTCACAAAGATTTGCATCT 27088354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| ||||| ||| ||| || || ||||| || ||||| Sbjct 27083817 CCTCCACGAAGGCGAAGGACCAAGTGTAGAGTGGACTCCTTCTGAATATTGTAGTCGGCG 27083876 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | | | || |||||||| || || ||||| ||||| | ||||||||| |||||| Sbjct 27083877 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGG 27083936 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGA---CT 39232 | || || ||||| ||| | | | || | | | | || ||||| ||| || Sbjct 27083937 -ATGCCTTCCTTGTCT-TGAATCTTAGCTTTAACATTGTCAATAGTATC---CGAACTCT 27083991 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | || || | || || || || || ||||||||||||||||| Sbjct 27083992 CAACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 27084043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537726429152