Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 196 4e-45 >seq7 Length=22269817 Score = 196 bits (216), Expect = 4e-45 Identities = 591/908 (65%), Gaps = 5/908 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| |||||| ||||||||||| || |||| | ||| || Sbjct 8164864 TTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGC 8164923 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||| ||||| | ||| | || | || || || | | | Sbjct 8164924 TCCATCCAATCAAAAGGATTCCCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 8164983 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 |||| || || ||||| ||||| ||||| ||||| | ||| | || || || | || Sbjct 8164984 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 8165043 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||| | || ||||||| ||||| || || || | | || Sbjct 8165044 GCGCAC-GGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 8165102 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | || | | | || | | | || | || | | |||| | ||||| || Sbjct 8165103 CGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCACGCGAA 8165162 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| || || | ||| || |||| |||| ||||| || || |||||||| ||||| Sbjct 8165163 ATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCAT 8165222 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 ||| || | |||||| ||||||||||| ||| ||| ||| || ||||| || || || Sbjct 8165223 TAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTC 8165282 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 ||| |||||||| | ||||| | |||| | || | | | | ||||| || Sbjct 8165283 CACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGT-CT--CCGAGCCGTCGATCCAATT 8165339 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 ||| ||||| | ||||| || ||||| |||| || | || |||| ||| | Sbjct 8165340 TAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACG 8165399 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 | ||||| | ||||| || ||||| |||| || || |||||||| || || Sbjct 8165400 GTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTG 8165459 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || || ||||| ||| | || || | || || || || Sbjct 8165460 GATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC 8165519 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | || ||| | | | ||| ||| || || ||||| |||||| || || || Sbjct 8165520 CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGC 8165579 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 | || || | | |||| || ||||||| | || | ||||||| | | ||| Sbjct 8165580 GAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATC 8165639 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 || | | ||||||||| ||| | ||||||||||||||||| ||||| |||||||| Sbjct 8165640 TTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 8165699 Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAG 5155 |||||| | || ||||||||||| | ||| ||||| | | || || | ||||| Sbjct 8165700 CCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTTGGGGCTAGAAG 8165759 Query 5156 CGGTTCTT 5163 ||| |||| Sbjct 8165760 CGGCTCTT 8165767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041772180832