Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 seq1 129 8e-25 seq3 100 4e-16 >seq6 Length=23636167 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 11061182 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 11061123 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 11061122 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 11061063 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 11061062 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 11061003 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 11061002 TCCTTCAATACTATCATCTTTCAT 11060979 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11060734 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 11060733 ACATATGCTGAGGTCTTTCTACA 11060711 >seq1 Length=32082701 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 28519932 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 28519873 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||||||||| ||||||||| || || || Sbjct 28519872 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 28519813 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 28519812 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 28519753 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 28519752 CCTTCAATACTATCATCTTTCATG 28519729 Score = 102 bits (112), Expect = 1e-16 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||| ||||||||||| || |||||| || ||| | | || | Sbjct 28519567 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 28519508 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || || || | ||| ||||| || ||||| || | |||||| Sbjct 28519507 TATGTTTTGATGGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 28519449 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || |||| ||||||| ||| | || | ||||| | ||| || | |||| Sbjct 28519448 CATATGTTGGGGTCTTTCTACA-ACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 28519390 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 28519389 GGGTTTTGAAGCCAAAATA 28519371 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA- 76146 || |||| |||||| || |||||||||||||||||||| |||||||||| | ||| || Sbjct 28521326 ATGAATGTATCTGCAAGACCCTGAACTCCAATACCAATGGGTCTATGTCGCAAATTTGAC 28521267 Query 76147 --AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| ||| || |||||| ||||||| ||| || ||||| || |||||| Sbjct 28521266 CTTCTTGCAGTTTC---AACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATTT 28521213 >seq3 Length=30666748 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 ||||| ||||||| |||| | ||| | ||| || | |||||| || || | ||||| Sbjct 26155575 ATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCATTGGAAGATCCATT 26155516 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887 ||||||| || ||||| || | ||||| |||||| ||| || || || |||||||| Sbjct 26155515 TGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAGAGACCAATTCCTCC 26155456 Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947 || ||| || | |||||| |||| || ||||| ||||| || || || || Sbjct 26155455 AGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATGCCTTCAATGCTGTC 26155396 Query 76948 ATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| ||||| | |||||| |||||| Sbjct 26155395 ATCTTTCATGCACAAAAGAAAGCAGCTA 26155368 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| || | ||| || | ||||||||| |||||| |||| ||||||| Sbjct 26160913 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 26160854 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||| | || || | ||| ||||| | ||||| || | || | || |||||| Sbjct 26160853 AGAAGCATCACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAAA 26160794 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| ||||| || | | || |||||| Sbjct 26160793 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCACGAGCCCGACATTCTTC 26160743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920996833280