Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11119 105 1e-17 seq29733 104 5e-17 seq27173 104 5e-17 seq25837 104 5e-17 seq18011 104 5e-17 seq10231 104 5e-17 seq7787 104 5e-17 seq6675 104 5e-17 seq19787 98.7 2e-15 seq1116 98.7 2e-15 seq26974 86.0 1e-11 seq3895 84.2 5e-11 >seq11119 Length=1240086 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 720055 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 719996 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 719995 CCCCACGGTGGGC 719983 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 721095 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 721036 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 721035 CCCCACGGTGGGC 721023 >seq29733 Length=805134 Score = 104 bits (114), Expect = 5e-17 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 165691 CGGCGGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCT 165750 |||||| ||| || | ||||||||||||||||||||||||||| || || |||| || Sbjct 259684 CGGCGGGCTTTAA---CAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCT 259740 Query 165751 GGTGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||||||||| ||||| Sbjct 259741 TGTGGTCGTGGGTTCGAGCCCCACGGTGGGC 259771 >seq27173 Length=1865913 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 822093 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 822152 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 822153 AGCCCCACGGTGGGC 822167 >seq25837 Length=998139 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 924751 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 924692 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 924691 CCCACGGTGGGC 924680 >seq18011 Length=419243 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 401722 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 401663 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 401662 CCCACGGTGGGC 401651 >seq10231 Length=516754 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 162423 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 162364 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 162363 CCCACGGTGGGC 162352 >seq7787 Length=547688 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 56359 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56418 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56419 CCCACGGTGGGC 56430 >seq6675 Length=1275739 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 74969 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 74910 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 74909 CCCACGGTGGGC 74898 >seq19787 Length=399118 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 116469 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 116410 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 116409 CCCACGGTGGGC 116398 >seq1116 Length=1452508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1037166 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1037225 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1037226 CCCACGGTGGGC 1037237 >seq26974 Length=240166 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACTTATGG 230473 ||||||| | || ||||| | || || ||| || ||| ||||||| | | ||| Sbjct 149259 GGAGTTCGTGTGCGACGCGCTGCCGTG-CGCATTGGTGGGGATGAACGGGGCGTTGATGA 149317 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 | |||||||| || || || || || | | || | ||| || || | || ||| |||| Sbjct 149318 GTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGCGCTCGGGTGCGGGAAGGTGT 149377 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 | | | | ||| || |||| | |||||| | |||||||| ||||||||||| || | Sbjct 149378 TCGGCGCGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAATT 149437 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||| || ||| | ||| | || || || | | || ||||||| Sbjct 149438 TCTTTGAGAAGAGAGTCGGGGAATACCAAAAGGCTTCTGTGATG 149481 >seq3895 Length=609050 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 || ||||| | ||| | ||| | |||||||| || || || || || | | || | | Sbjct 438113 GGGATGAATGGAGAATTGATGAGTCAGTACATAGAGTTTGTCGCAGATAGATTGTTGGGT 438172 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || ||||| |||| ||| |||||| ||| || |||| | |||||||| || Sbjct 438173 GCGCTTGGGTACGGGAAGCTGTACAGTGTGGCGAATCCTTTTGATTGGATGGAGCTGATC 438232 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 ||||| ||||||||||| || ||||| |||||| | || | || ||||| | | || | Sbjct 438233 TCGCTCCAAGGGAAGACTAATTTCTTTGAAAAGAGAGTTGGGGAATATCAAAAGGCTTCT 438292 Query 230632 GTGATG 230637 || ||| Sbjct 438293 GTTATG 438298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057380384646530