Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3895 154 2e-32 seq26974 132 5e-26 >seq3895 Length=609050 Score = 154 bits (170), Expect = 2e-32 Identities = 564/873 (65%), Gaps = 19/873 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | ||||| || || ||||| || || | || || || || Sbjct 438284 TTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCT 438225 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||||| | | | | || |||||| || | | | | Sbjct 438224 CCATCCAATCAAAAGGATTCGCCACACTGTACAGCTTCCCGTACCCAAGCGCACCCAACA 438165 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||||||| || ||||| ||||| || || | ||| ||||| | ||||| || | | || Sbjct 438164 ATCTATCTGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-AC 438106 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAAT 16911 | | ||| || || || || ||| | |||||| | ||||| ||||| | ||| Sbjct 438105 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 438046 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTA----TGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| |||||| | | | ||| ||| ||| ||| || | Sbjct 438045 GCCTTCA-CTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACG 437991 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||||| |||| ||| | ||||| || ||||| || || | Sbjct 437990 CGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAATCCCG 437931 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || || || | ||||||||| ||| || ||| || ||||| || | Sbjct 437930 GCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAAATCC 437871 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| ||| | |||||||||||||||| || ||| | ||| | || || |||| Sbjct 437870 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGT--CG-ATCC 437814 Query 17148 ATTTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| Sbjct 437813 AATTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAA 437756 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| | ||| | || || || || | || || ||||||||| Sbjct 437755 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 437696 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTG 17325 |||||| |||||||| ||||| || || || ||||| ||| || || || || | || Sbjct 437695 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTG 437636 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| ||| | | | || || || ||| |||||||||||| || ||||| Sbjct 437635 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 437576 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | | ||||| | ||| | || ||||| | || || | ||||| Sbjct 437575 GAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 437516 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||||| || | ||| ||||| || | ||||||||| || | || || || || Sbjct 437515 GAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 437456 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| | ||| || || ||||| Sbjct 437455 CATTTCCCAAATTTGTGGGTACTGAATCGGGAA 437423 >seq26974 Length=240166 Score = 132 bits (146), Expect = 5e-26 Identities = 314/469 (67%), Gaps = 9/469 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 149185 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGA 149126 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || ||||| || || || |||||||||||||||||| ||| || | Sbjct 149125 AGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 149066 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 149065 AGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 149006 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||| || | |||| ||||| |||| | ||| || |||||| | Sbjct 149005 CGT--CG-ATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 148949 Query 17196 TGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGG--TCGATTATATACGTATCGATGAGTA 17252 ||| |||||| ||||||| || || | |||| ||||| || | || | Sbjct 148948 AGGCGCGAAATAAGCGGCTCTTTT---CGTCGGAATTTTTTATGTACGTTTCTAGAAGGA 148892 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||||||||||||| |||||||| ||||| || || || ||||| ||| || | Sbjct 148891 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 148832 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | || | | ||| ||||| ||| | | || || |||||| ||||| |||| Sbjct 148831 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGT 148772 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 | |||||||| || || | | ||| | ||||| | ||| ||||| Sbjct 148771 CCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTC 148723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517333852687080