Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq31290 86.0 5e-12 seq30011 86.0 5e-12 seq5684 82.4 6e-11 >seq31290 Length=752448 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || ||||| || ||||| || ||||||||||||||| || ||| | || ||| Sbjct 237615 GATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAAGATGGCAGAACGCTTGCAGAT 237556 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||||||||| || || |||||| |||| Sbjct 237555 TATAACATTCAAAAGGAGTCAACACTTCACTTGGT 237521 >seq30011 Length=125740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| ||||||| | ||||| || || || ||| |||| || | | Sbjct 33466 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 33525 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| || || || || ||||| | || || || Sbjct 33526 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 33585 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || || ||| | || || | ||| |||||||||||||| Sbjct 33586 CAGAGACTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 33645 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || || |||||||| ||||||||| | ||| Sbjct 33646 ATCCAGAAGGAATCAACTCTTCACCTCGTG 33675 >seq5684 Length=29006 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| ||||||| | ||||| || || || ||| |||| || | | Sbjct 5337 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5396 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| || || || || ||||| | || || || Sbjct 5397 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5456 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || ||| | || || | ||| |||||||||||||| Sbjct 5457 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5516 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || || |||||||| ||||||||| | ||| Sbjct 5517 ATCCAGAAGGAATCAACTCTTCACCTCGTG 5546 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| ||||||| | ||||| || || || ||| |||| || | | Sbjct 5565 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5624 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| || || || || ||||| | || || || Sbjct 5625 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5684 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || ||| | || || | ||| |||||||||||||| Sbjct 5685 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5744 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || || |||||||| ||||||||| | ||| Sbjct 5745 ATCCAGAAGGAATCAACTCTTCACCTCGTG 5774 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| ||||||| | ||||| || || || ||| |||| || | | Sbjct 5793 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5852 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||||| || || || || ||||| | || || || Sbjct 5853 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5912 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || || ||| | || || | ||| |||||||||||||| Sbjct 5913 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5972 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || || |||||||| ||||||||| | ||| Sbjct 5973 ATCCAGAAGGAATCAACTCTTCACCTCGTG 6002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410632929433634