Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5117 127 3e-24 seq5228 95.1 2e-14 >seq5117 Length=577398 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| || | ||| | ||| Sbjct 108862 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 108803 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||| || || ||||| || ||||| || || Sbjct 108802 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 108743 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| |||| ||| | ||| || || Sbjct 108742 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGTCGCACACTTTCAGACTACAAC 108683 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || |||||||| | |||||||| | ||| | | |||||||| Sbjct 108682 ATCCAGAAGGAATCAACCCTTCATTTGGTACTTCGTCTCAGGGGTGGTAT 108633 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||| || ||||| | ||| ||||| Sbjct 149090 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAGACAATAACCCTTGAGGTTGAAAGCTCC 149031 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 149030 GACACCATTGATAATGTAAAAGCCAAGATCCAGGACAAGGAAGGGATCCCACCAGATCAG 148971 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || ||||| | |||||| |||| ||| | | || |||||| Sbjct 148970 CAGAGGCTTATCTTTGCTGGTAAACAGCTCGAGGATGGTCGCACACTTGCTGACTATAAT 148911 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| | || ||||| | || | | |||||||| Sbjct 148910 ATCCAGAAAGAATCAACCCTCCACTTGGTCCTTCGACTTAGGGGTGGTAT 148861 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || || ||||| ||||| || ||| | ||| | ||| | Sbjct 111790 ATGCAGATATTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGCTCT 111731 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 111730 GACACCATTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 111671 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 111670 CAGCGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 111611 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 111610 ATCCAGAAAGAATCCACTCTCCACTTGGTTCTTCGCCTCCGTGGTGGTAT 111561 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 148178 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 148119 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 148118 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 148059 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 148058 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 147999 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 147998 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 147949 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 148406 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 148347 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 148346 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 148287 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 148286 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 148227 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || |||||||| Sbjct 148226 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGTAT 148177 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||||||| | ||| ||||| | Sbjct 108634 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 108575 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| || || || || || || |||||||| Sbjct 108574 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 108515 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || |||| ||| | || || | | || || || Sbjct 108514 CAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 108455 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| | || | || |||||||| Sbjct 108454 ATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGCCTTCGTGGTGGTAT 108405 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||||||| | ||| ||||| | Sbjct 112018 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 111959 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| || || || || || || || ||||| Sbjct 111958 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 111899 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || |||||| | || ||| | || || ||| || || || Sbjct 111898 CAGAGATTGATCTTTGCTGGCAAACAACTTGAAGATGGCCGTACTCTAGCTGACTACAAC 111839 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || |||||||| Sbjct 111838 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 111789 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | ||| | || Sbjct 107950 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 107891 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || || |||||||| || || || ||||| || || Sbjct 107890 GACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 107831 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||||||||| || || | || ||| | | || | | |||||| || Sbjct 107830 CAGAGATTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 107771 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||| || |||||||||| || Sbjct 107770 ATTCAGAAGGAATCCACACTGCATTTGGTGTT 107739 >seq5228 Length=576636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 536507 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 536566 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || || || || ||||| ||||| Sbjct 536567 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCA 536625 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 536626 ACAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAA 536685 Query 124718 TATTCAAAAAGAATCAACT 124736 ||| || ||||| |||||| Sbjct 536686 TATCCAGAAAGAGTCAACT 536704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755146914620800