Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3895 102 8e-17 seq26974 98.7 1e-15 seq30846 93.3 4e-14 >seq3895 Length=609050 Score = 102 bits (112), Expect = 8e-17 Identities = 120/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 437994 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAAT 437935 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 437934 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGC-GCAAAAACTCCCTGAGAAGAA 437876 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 || ||||| || ||||||||| ||||||| ||||| Sbjct 437875 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 437839 >seq26974 Length=240166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || ||||| ||||| || || || || ||||||| || || |||||||| || ||| Sbjct 149180 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGAAGGTT 149121 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | ||| ||||| || || || ||||||||||||||||| || ||| || || ||| Sbjct 149120 AGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 149061 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 ||||| || || || |||||||||||| | || ||||| Sbjct 149060 AATATGCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 149022 >seq30846 Length=759859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 462264 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 462323 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 462324 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 462362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482148254327080