Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq31290 109 4e-19 seq5117 100 2e-16 seq12231 82.4 6e-11 >seq31290 Length=752448 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| |||||||||||| || ||||||||||| || || || Sbjct 237502 TCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGC 237561 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||||||||| || ||| | || ||||| || |||||| || Sbjct 237562 AAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAGG 237621 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 237622 AATGCCTTCCTTGTC 237636 >seq5117 Length=577398 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | |||||||| ||||| |||||||| || || ||||||||||| || Sbjct 112020 CCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCA 112079 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||||||||| ||| |||| || ||||| || || || Sbjct 112080 AGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 112139 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| ||||| | || ||||| | ||| |||| ||| || || Sbjct 112140 ATCCCTTCCTTATCCTGAATTT-TGGCTTTGACATTGTCAATGGTGT--CCGAGCTTTCC 112196 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| | || || || | || |||||||| |||||||| Sbjct 112197 ACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 112246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | |||||||| ||||| |||||||| || || ||||||||||| | Sbjct 108636 CCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAA 108695 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||||||||| ||| | ||||| ||||| || || || Sbjct 108696 AGTGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 108755 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | || ||||| | ||| |||||| | || Sbjct 108756 ATTCCTTCCTTGTCCTGAATCT-TGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCCAC 108814 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| |||| || || | || |||||||| || ||||| Sbjct 108815 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 108862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || || || || ||||| ||||||||||| Sbjct 108180 CCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCA 108239 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | || || || ||| ||||||| || || || || || Sbjct 108240 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGG 108299 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | |||| | | || ||| ||| || ||| Sbjct 108300 ATGCCTTCCTTGTCTTGAATCT-TAGCTTTAACATTGTCAATAGTATCCGAACTCTCAAC 108358 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| | ||||| || | || || ||||| |||||||| Sbjct 108359 TTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 108406 >seq12231 Length=1221202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| |||||||||||| || || ||||| || || || || Sbjct 690730 TCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATATTATAATCAGC 690789 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||||||| || ||| | || | ||| || ||||| || Sbjct 690790 AAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGATCTGGAGG 690849 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 690850 AATGCCTTCCTTGTC 690864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379192676240595