Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq30011 86.0 5e-12 seq5684 86.0 5e-12 >seq30011 Length=125740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || |||||| |||| || || ||||| ||| |||| ||||| ||| Sbjct 33693 CATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAGGTCGA---GAG 33749 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | || |||| || || | || ||||| | ||| || Sbjct 33750 CTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGA 33809 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||||| || | || ||||| || ||||| ||| | ||| | ||||| Sbjct 33810 CCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATTA 33869 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||| ||||| || | || |||||| | ||||| || Sbjct 33870 CAACATTCAGAAGGAATCAACTCTTCATCTGGTGTTGCG 33908 >seq5684 Length=29006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || |||||| |||| || || ||||| ||| |||| ||||| ||| Sbjct 6020 CATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAGGTCGA---GAG 6076 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | || |||| || || | || ||||| | ||| || Sbjct 6077 CTCCGACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGA 6136 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||||| || | || ||||| || ||||| ||| | ||| | ||||| Sbjct 6137 CCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATTA 6196 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||| ||||| || | || |||||| | ||||| || Sbjct 6197 CAACATTCAGAAGGAATCAACTCTTCATCTGGTGTTGCG 6235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418137134743520