Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq28498 109 5e-19 seq27564 82.4 7e-11 >seq28498 Length=175162 Score = 109 bits (120), Expect = 5e-19 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 163425 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 163484 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||||||| || || ||| |||||| | ||| Sbjct 163485 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 163544 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || |||||||||| Sbjct 163545 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTA 163588 >seq27564 Length=213285 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| ||||| || ||||| | ||| ||||||||||| | |||||| || |||| Sbjct 94303 TGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCAT 94362 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || ||||||| || || ||| || ||| | |||||| || | || |||||||| Sbjct 94363 ATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCAT 94422 Query 38529 TAGCATATGTTGTGGTCTTTCTA 38551 | ||||||||| |||||||||| Sbjct 94423 CAACATATGTTGGGGTCTTTCTA 94445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468333108934640