Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3895 161 1e-34 seq26974 132 6e-26 seq28498 91.5 2e-13 seq27564 89.7 7e-13 >seq3895 Length=609050 Score = 161 bits (178), Expect = 1e-34 Identities = 399/603 (66%), Gaps = 2/603 (0%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || || |||||||||||||| |||||||| |||| ||||| ||||| || | Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | ||| ||||||| || |||||||| ||||||||||||| |||||| | || Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGG-CGCAAAAACTCCCT 437884 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || |||||||| || || || ||||| || || | |||||| | || | | Sbjct 437883 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 437824 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| ||| ||||| ||| |||||| || || || | ||||| || Sbjct 437823 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 437764 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 437763 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 437704 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || || ||||| || ||||| ||||| || |||||||| | |||||| Sbjct 437703 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCG 437644 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | | ||| || || || || | | | || | || || || || ||||| | Sbjct 437643 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 437584 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || || | || | || |||| | ||||| | | Sbjct 437583 GCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 437524 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | || ||||| || | ||| ||||| || | |||||||| || || || || Sbjct 437523 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCT 437464 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 || || ||||| | ||| || | | || ||||| || || || ||||| || || Sbjct 437463 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 437404 Query 36749 TTT 36751 ||| Sbjct 437403 TTT 437401 >seq26974 Length=240166 Score = 132 bits (146), Expect = 6e-26 Identities = 385/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 149185 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGA 149126 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || ||||| ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 149125 AGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 149067 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 36325 || ||||| || ||||| || ||||| || || |||||||| | || | | | Sbjct 149066 GAGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 149007 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| ||| | ||||| |||||||| || || || |||| || || Sbjct 149006 CCGTC---GATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 148950 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | || ||| | | | ||||| | || ||| | || || || | | || Sbjct 148949 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGC 148890 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 148889 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 148830 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 148829 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCC 148770 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 ||| || || || || | || || | || || | ||| |||| | ||||| Sbjct 148769 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 148710 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 148709 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 148650 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || ||||| | |||||| || | || || || ||||| || Sbjct 148649 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACAT 148603 >seq28498 Length=175162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || |||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 163120 CCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 163179 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| || || || || ||||| |||||| |||||||||| || || ||| Sbjct 163180 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 163239 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 163240 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 163299 Query 66396 CCCTCTATACTATCATCCATCAT 66418 || || ||||||||||| |||| Sbjct 163300 CCTTCAATACTATCATCTTTCAT 163322 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 163568 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 163627 Query 66634 AAGTTTTAAAACCAAAATA 66652 ||||| || ||||| || Sbjct 163628 GGGTTTTGAAGCCAAAGTA 163646 >seq27564 Length=213285 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| ||||| |||||||||| || || ||| Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 94122 CCTTCAATACTATCATCTTTCATG 94145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657903516826040