Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5117 107 2e-18 seq31290 105 7e-18 seq30011 105 7e-18 seq5684 105 7e-18 seq17788 89.7 5e-13 seq11564 89.7 5e-13 seq5228 86.0 6e-12 >seq5117 Length=577398 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || ||||| || || ||||| || | ||||| || ||| Sbjct 148882 ACCAAGTGGAGGGTTGATTCTTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCG 148941 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||||| || || || ||||| ||||| | Sbjct 148942 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 149001 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||||| | || ||||||| ||| | |||||| Sbjct 149002 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 149061 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 149062 CCGGTGAGAGTTTTCACAAAGATTTGCAT 149090 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| ||||| | || ||||| || || |||||||||||| | ||||| | Sbjct 112259 ACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCC 112318 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||||||||||||| |||| || | |||||||| || || || ||||| || Sbjct 112319 ATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTT 112378 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | || |||| | || ||||||| ||| | Sbjct 112379 GTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTAT 112438 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| | || || || || |||||||| Sbjct 112439 GGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 112474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||||||||| Sbjct 148636 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 148695 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||||||||| ||| |||| || | ||||| || || || Sbjct 148696 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 148755 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||||| | ||||| Sbjct 148756 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCAC 148814 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | || ||||| || || |||||| Sbjct 148815 CTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 148863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || |||||||| || | |||| || || Sbjct 108882 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCA 108941 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||| || || || || ||||| || || | Sbjct 108942 AGCTGTTTACCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 109001 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||| | | || ||||||| ||| | |||||| Sbjct 109002 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 109061 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || |||||||| Sbjct 109062 CCGGTGAGAGTCTTCACAAAGATTTGCAT 109090 >seq31290 Length=752448 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 673831 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 673772 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| |||||||| || || || ||||||| || ||||| || || || Sbjct 673771 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 673712 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 673711 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCAC 673652 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| ||||| || || || ||||| Sbjct 673651 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCAT 673604 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | ||| || || || || |||||||||||| || |||| | Sbjct 674046 CGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCG 673987 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || ||||||| | ||||| || || || || || |||||| Sbjct 673986 TCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATCCCCTCTTTG 673927 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||| | ||| | | Sbjct 673926 TCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATC 673867 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||||| || || ||||| || ||||| Sbjct 673866 GTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 673832 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| |||||| | || | || |||||||| || || Sbjct 674256 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTTCGGCCATCCTCGAGCTGCTTGCCG 674197 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| || || |||||||| ||| || || Sbjct 674196 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC 674137 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | |||||| ||||||||||| Sbjct 674136 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTC 674077 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 674076 TTGACGAAGATCTGCAT 674060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| ||||||||||||||||| | || || ||||| Sbjct 237521 ACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 237580 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | |||||||||||| | ||||| | |||||||| ||||| |||||||| ||||| Sbjct 237581 AATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 237636 >seq30011 Length=125740 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || ||||| || || |||||| || |||| ||||||||||||| Sbjct 33212 TGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGT 33153 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| ||||| || ||||| || ||||| ||||| ||| || Sbjct 33152 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG 33093 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| || || | || | ||||||||||| Sbjct 33092 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTT 33033 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 33032 AGGGTTTTCACGAAGATCTGCAT 33010 >seq5684 Length=29006 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || ||||| || || |||||| || |||| ||||||||||||| Sbjct 5083 TGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGT 5024 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| ||||| || ||||| || ||||| ||||| ||| || Sbjct 5023 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG 4964 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| || || | || | ||||||||||| Sbjct 4963 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTT 4904 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 4903 AGGGTTTTCACGAAGATCTGCAT 4881 >seq17788 Length=1137600 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | | |||||||||||| || || Sbjct 831012 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCG 831071 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 831072 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 831131 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||||||||| | || | ||||| || || | ||| Sbjct 831132 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 831191 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 831192 TTCACGAAGATCTGCAT 831208 >seq11564 Length=494905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 82693 GCCGCCGCGGAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 82634 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| | |||||| || | || ||||||| | ||||| || || || Sbjct 82633 CAAGGTGCGCCCGTCCTTGAGCTGCTTTTCGGCGAAGATCAGCTGCTGCTGGTCCGGTGG 82574 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 82573 AATCCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCGATCGTGTCGGAGCTCTCCAC 82514 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT-ACGAATATTTGCAT 139764 ||| | || | |||||||||||||| |||||| || || || ||||| Sbjct 82513 CTCGAGAGTGATAGTCTTGCCGGTCAAAGTTTTTCACAAAGATCTGCAT 82465 >seq5228 Length=576636 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || |||||||||||||| ||| | || | || || ||||| || || Sbjct 488255 GTGGACTCCTTCTGAATGTTATAATCAGCT-AAAGTACGGCCATCCTCAAGCTGCTTCCC 488197 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| | Sbjct 488196 AGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 488138 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | || || | | ||||||||| | || | ||||| || ||||| | Sbjct 488137 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 488078 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || ||||| |||||| Sbjct 488077 TCTTGACAAATATCTGCATA 488058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| |||||| || |||| ||| |||||||| Sbjct 487121 TGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGC 487062 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| || | ||||| || || || || || || ||||| ||| || Sbjct 487061 TTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGAATTCCCTCCTTGTCTTGGATCTTG 487002 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | || | ||||| | | ||| || || | || | || ||||||||| Sbjct 487001 GCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTC 486942 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || ||||| || || || |||||| Sbjct 486941 AAGGTTTTCACAAAGATCTGCATA 486918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495861041615200