Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3895 107 2e-18 seq26974 102 8e-17 seq30846 95.1 1e-14 >seq3895 Length=609050 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 437994 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAAT 437935 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || || ||||| | ||||||||| || ||| ||| || ||||| Sbjct 437934 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAA 437875 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || ||||| || ||||||||| ||||||| ||||| Sbjct 437874 ATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 437839 >seq26974 Length=240166 Score = 102 bits (112), Expect = 8e-17 Identities = 122/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || |||||||| || ||| Sbjct 149180 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGAAGGTT 149121 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC--AGCAAATGACCCGGAAA 13986 | ||| ||||| || || || ||||||||||||||||| || || || || || || | Sbjct 149120 AGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCC--GAGA 149063 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || |||||||||||| | || ||||| Sbjct 149062 AGAATATGCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 149022 >seq30846 Length=759859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 462264 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 462323 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 462324 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 462366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479531725285400