Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5117 98.7 8e-16 seq30011 96.9 3e-15 seq5684 96.9 3e-15 >seq5117 Length=577398 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||||||| ||||||||||| | ||| ||||| || | |||||||| | Sbjct 107724 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 107783 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || ||||| ||||||||||||| ||| || || | || Sbjct 107784 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAATCTCTGCTGGTCTGGTGGA 107843 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 107844 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 107903 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| ||||||||||||||||| Sbjct 107904 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 107950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| || |||||| || | ||||| || | Sbjct 111792 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 111851 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||||||| ||||| ||||||| ||| ||||||| || Sbjct 111852 AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGG 111911 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | || || || || |||| || | ||||| || | | |||||| ||| | | | Sbjct 111912 ATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCGATTGTGTCAG-AGCTTTCAA 111969 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||||||||| || || || |||||||||||||| ||||| Sbjct 111970 CCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 112018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || |||||| || | ||||| || | Sbjct 148180 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 148239 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||||||||||||| || || | ||||||||| | || Sbjct 148240 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 148299 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || | | ||||| ||| || || Sbjct 148300 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTC-AGAGCTTTCAAC 148358 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| || || || || |||||||||||||| ||||| Sbjct 148359 CTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 148406 >seq30011 Length=125740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | ||| | ||| | || |||||||| | ||||||||||| Sbjct 33237 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 33178 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || |||| || | ||||| ||||| || |||| ||||| || || | || Sbjct 33177 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 33118 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || | | |||||| ||| ||||| Sbjct 33117 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCGA 33059 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 | || | || || || || |||||||| |||||||| || || ||||| || |||| Sbjct 33058 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT-TTAA 33003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || || || |||| || | ||| || |||||||| Sbjct 33656 TCCTTCTGGATATTGTAATCGGCCAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 33597 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| || ||| || || | ||| | ||||| || || |||| | ||||| || Sbjct 33596 ATCAGTCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 33537 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | || || || ||||| ||||| ||||| || Sbjct 33536 TCGATCGTGTCG-GAGCTCTCGACTTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGAC 33478 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 33477 GAATATCTGCAT 33466 >seq5684 Length=29006 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | ||| | ||| | || |||||||| | ||||||||||| Sbjct 5108 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5049 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || |||| || | ||||| ||||| || |||| ||||| || || | || Sbjct 5048 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 4989 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || | | |||||| ||| ||||| Sbjct 4988 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCGA 4930 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 | || | || || || || |||||||| |||||||| || || ||||| || |||| Sbjct 4929 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT-TTAA 4874 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || || || |||| || | ||| || |||||||| Sbjct 5527 TCCTTCTGGATATTGTAATCGGCCAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 5468 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | ||| || || | ||| | ||||| || || |||| | ||||| || Sbjct 5467 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5408 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | || || || ||||| ||||| ||||| || Sbjct 5407 TCGATCGTGTCG-GAGCTCTCGACTTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGAC 5349 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 5348 GAATATCTGCAT 5337 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || || || |||| || | ||| || |||||||| Sbjct 5755 TCCTTCTGGATATTGTAATCGGCCAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 5696 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | ||| || || | ||| | ||||| || || |||| | ||||| || Sbjct 5695 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5636 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | || || || ||||| ||||| ||||| || Sbjct 5635 TCGATCGTGTCG-GAGCTCTCGACTTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGAC 5577 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 5576 GAATATCTGCAT 5565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| || || || |||| || | ||| || |||||||| Sbjct 5983 TCCTTCTGGATATTGTAATCGGCCAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 5924 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | ||| || || | ||| | ||||| || || |||| | ||||| || Sbjct 5923 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5864 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | || || || ||||| ||||| ||||| || Sbjct 5863 TCGATCGTGTCG-GAGCTCTCGACTTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTTGAC 5805 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 5804 GAATATCTGCAT 5793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381217468210398