Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3895 187 3e-42 seq26974 158 2e-33 seq28498 95.1 2e-14 seq27564 84.2 3e-11 >seq3895 Length=609050 Score = 187 bits (206), Expect = 3e-42 Identities = 415/620 (67%), Gaps = 2/620 (0%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || |||||||||||||| ||||||||||||| ||||| ||||| || | Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATAT-GGCGCAAAAACTCCCT 437884 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || ||||| || || || || ||||| || || | |||||| | || | | Sbjct 437883 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 437824 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| ||| ||||| ||| |||||| || || || | ||| || ||| Sbjct 437823 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 437764 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 437763 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 437704 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || || ||||| || ||||| || || || |||||||| | |||||| Sbjct 437703 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCG 437644 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||||| || || || || | | | || | || ||| || || ||||| | Sbjct 437643 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 437584 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 ||||| || || || | || || || | || | || ||||| | |||| | | Sbjct 437583 GCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 437524 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || | || ||||| || | ||| ||||| || | |||||||| || ||||| || Sbjct 437523 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCT 437464 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || || ||||| | ||| || | | || ||||| ||||| || ||||| || ||| Sbjct 437463 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 437404 Query 42656 TTTGGTGCAAGGATCGGTTC 42675 ||||| || || | ||| || Sbjct 437403 TTTGGGGCTAGCAGCGGCTC 437384 >seq26974 Length=240166 Score = 158 bits (174), Expect = 2e-33 Identities = 403/608 (66%), Gaps = 8/608 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || || ||||||| |||| ||||| || | Sbjct 149185 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGA 149126 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || ||||| ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 149125 AGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 149067 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 42232 || ||||| || ||||| || ||||| || || |||||||| | || | | | Sbjct 149066 GAGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 149007 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| ||| | ||||| |||||||| || || || |||| |||||| Sbjct 149006 CCGTC---GATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 148950 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | ||| ||| | | | ||||| | || ||| | || || || | | || Sbjct 148949 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGC 148890 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 148889 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 148830 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| || || |||||| | || | | || | |||||| || |||||||| Sbjct 148829 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCC 148770 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||| || || || || | || || | || || | ||| ||||| | |||| Sbjct 148769 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 148710 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | ||| || | || | || || || || ||||||||||||| ||||| Sbjct 148709 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 148650 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 || || || ||||| | |||||| || | || || || || || || |||| || | Sbjct 148649 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATGCAGAATCGATCT 148590 Query 42653 GGATTTGG 42660 || || || Sbjct 148589 GGGTTCGG 148582 >seq28498 Length=175162 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | |||||| || || ||||| | ||| || ||||| | | || | ||| | Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 163568 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 163627 Query 72596 AAGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 163628 GGGTTTTGAAGCCAAAGTA 163646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || |||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 163120 CCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 163179 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| || || || || ||||| |||||| | |||||||| ||| || ||| Sbjct 163180 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 163239 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 163240 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 163299 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 163300 CCTTCAATACTATCATCTTTCAT 163322 >seq27564 Length=213285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| ||||| | |||||||| ||| || ||| Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 72358 CCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 94122 CCTTCAATACTATCATCTTTCATG 94145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670864611785560