Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq30011 109 6e-19 seq5684 109 6e-19 seq5228 93.3 4e-14 seq5117 86.0 6e-12 >seq30011 Length=125740 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 33237 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 33178 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| ||||| || || |||||||||| ||||| || ||||| Sbjct 33177 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 33118 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 33117 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 33058 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 33057 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 33010 >seq5684 Length=29006 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 5108 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5049 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| ||||| || || |||||||||| ||||| || ||||| Sbjct 5048 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 4989 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 4988 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 4929 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 4928 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 4881 >seq5228 Length=576636 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || || || || || |||||||||||| Sbjct 487146 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 487087 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || |||||| |||| || | ||||| || || || Sbjct 487086 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGG 487027 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || |||| | || | ||||||| | || || Sbjct 487026 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGAC 486967 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || ||||||||||| ||||| || || || |||||| Sbjct 486966 TTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACAAAGATCTGCATA 486918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||| | || || || || ||||||||||||||| Sbjct 487374 GCCTCCGCGGAGACGAAGGACGAGATGGAGCGTTGACTCCTTCTGTATGTTGTAATCGGC 487315 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || |||||| |||| || | |||||||| || || Sbjct 487314 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGGGG 487255 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| || || | | || | ||||| | | || || Sbjct 487254 GATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 487195 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 487194 TTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 487147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 536247 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 536188 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 536187 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTG 536128 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 536127 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 536068 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 536067 TTCACGAAGATCTGCATA 536050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||| | ||| || || Sbjct 536475 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCG 536416 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 536415 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 536356 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||| | ||| Sbjct 536355 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 536296 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 536295 TTGACGAAGATCTGCAT 536279 >seq5117 Length=577398 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 148426 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 148484 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||| ||| |||| || | |||||| || || || || ||||| || || Sbjct 148485 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 148544 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | || | ||||| | | ||| || |||| || | ||||| Sbjct 148545 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTT 148604 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || ||||| || || |||||| Sbjct 148605 TCCAGTGAGGGTCTTTACAAAGATCTGCATA 148635 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || || || || || | ||||| || ||||| ||||||||| Sbjct 148894 GTTGATTCTTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCGAGCTGTTTACCA 148953 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | |||||||| || || || ||||| ||||| || || |||| Sbjct 148954 GCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTT 149013 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| || |||| || | ||||||||||| | ||| Sbjct 149014 ACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTT 149073 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 149074 TTCACAAAGATTTGCAT 149090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506806961395920