Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3895 122 1e-22 >seq3895 Length=609050 Score = 122 bits (134), Expect = 1e-22 Identities = 375/564 (66%), Gaps = 26/564 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | || || |||||||| | || || || ||||| Sbjct 437444 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATCTT 437503 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 || | || || | | |||||| | | | || | |||| ||||| || | Sbjct 437504 TCGCAAGATCTCCGCCACTGGGAGGCCC---TAACCG---CTGA-CGAGAAGCACTTCGT 437556 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 |||| | | |||||||| || | |||||| || |||||| ||| || || Sbjct 437557 CAAGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGG 437616 Query 125195 ACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | | ||| ||| | ||| || | |||| | ||||| || ||||| |||||||| Sbjct 437617 AAGGTTCATGACGGAGGT--CCAGGTCGCCGAGGCG-CGTGCCTTCTACGGCTTCCAAAT 437673 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | || |||||| | ||||| ||||||||||| || | || | ||||| || Sbjct 437674 CGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGA 437733 Query 125312 -TCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| ||| | | |||||| |||| ||||| ||||| || | | || ||| Sbjct 437734 CTCCG--ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGT-CGCAAA 437790 Query 125370 -AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 || || |||| | | |||||||| | | || ||| ||| || ||| | Sbjct 437791 GAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT---CGCGGAGAGATT 437847 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || || || ||| ||||| || ||||| || || |||||| ||||| ||||| Sbjct 437848 AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCCATATTTTG 437907 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| ||| | || | |||||||| || || ||||| Sbjct 437908 GCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTAATCTCGCGAGA 437967 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||| || ||||| || || || Sbjct 437968 TGAGGGTCTCCACTGCGATTTCGC 437991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740756004891560