Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5117 96.9 3e-15 seq30011 89.7 4e-13 seq5684 89.7 4e-13 >seq5117 Length=577398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || ||||| ||||| || | || | ||||| Sbjct 107969 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTC 108028 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | ||||| | || |||||| ||||| || || || || Sbjct 108029 AAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 108088 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | |||||||| || | |||| || || || || ||||| || Sbjct 108089 GATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTT 108148 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| || |||||| Sbjct 108149 CCCAGTCAAAGTCTTCACAAAGATCTGCATA 108179 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| || || ||||| || ||||| || || || ||||||||||| Sbjct 107724 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 107783 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||| | || ||||| || | ||||| | || ||||| |||| Sbjct 107784 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAATCTCTGCTGGTCTGGTGGA 107843 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| ||| | || || || || | | ||||| Sbjct 107844 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 107903 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 107904 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 107950 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| || |||| | | | ||||| Sbjct 111810 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCA 111869 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| | || || ||| || || || || ||||| | Sbjct 111870 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 111929 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || |||| || || || || || |||||| Sbjct 111930 ATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 111989 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| |||||||| |||||| Sbjct 111990 CCAGTCAGGGTTTTCACAAAAATCTGCATA 112019 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 112038 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 112097 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | | ||| ||||| ||| || ||||| || || | Sbjct 112098 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 112157 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| || |||| || || | ||||||||| || Sbjct 112158 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 112217 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| |||||||| Sbjct 112218 CCAGTGAGGGTCTTTACAAAGATTTGCAT 112246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 108654 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAAAGTGTGCGACCATCCTCA 108713 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | | ||| ||||| ||| |||||||| ||||| | Sbjct 108714 AGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGA 108773 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || || || ||| |||| || || | ||| || ||||| Sbjct 108774 ATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTT 108833 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || |||||| Sbjct 108834 CCAGTGAGGGTCTTTACAAAGATCTGCATA 108863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || || ||||| ||| || | || | ||||| Sbjct 108198 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTTCCATCTTCA 108257 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| || || ||||| ||||| | Sbjct 108258 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 108317 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || ||||| | | || || |||||||||||||| || Sbjct 108318 ATCTTAGCT-TTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTT 108376 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 108377 GCCAGTAAGAGTCTTAACAAAGATTTGCATA 108407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 148426 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 148485 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || | || | | ||| ||||| ||| || ||||| || || | Sbjct 148486 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 148545 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| ||| |||| || || | ||| || || || Sbjct 148546 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 148605 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || |||||| Sbjct 148606 CCAGTGAGGGTCTTTACAAAGATCTGCATA 148635 >seq30011 Length=125740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | || || | |||||| || || || || || ||||||||||| Sbjct 33922 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 33863 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | || || | || ||||||||| | |||||||| || ||||| | Sbjct 33862 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 33803 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| ||| || | || || || ||| | || | Sbjct 33802 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGA 33743 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 33742 CCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 33694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || ||||||||||| ||| | | |||| || | || Sbjct 34125 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 34066 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | || | | || || || ||| || ||||| ||||| ||| || Sbjct 34065 TTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT 34006 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || |||||||| | | || || || | |||||| || || || || Sbjct 34005 GGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGT 33946 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 33945 CAATGTCTTGACAAAAATCTGCAT 33922 >seq5684 Length=29006 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | || || | |||||| || || || || || ||||||||||| Sbjct 6249 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 6190 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | || || | || ||||||||| | |||||||| || ||||| | Sbjct 6189 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 6130 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| ||| || | || || || ||| | || | Sbjct 6129 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGA 6070 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 6069 CCTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 6021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || ||||||||||| ||| | | |||| || | || Sbjct 6452 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 6393 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | || | | || || || ||| || ||||| ||||| ||| || Sbjct 6392 TTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT 6333 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || |||||||| | | || || || | |||||| || || || || Sbjct 6332 GGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGT 6273 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 6272 CAATGTCTTGACAAAAATCTGCAT 6249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362034723434871