Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5228 100 2e-16 seq5117 93.3 3e-14 seq31290 87.8 1e-12 >seq5228 Length=576636 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 ||| |||||||| || || |||||||| |||| || | ||||||| ||||| || || Sbjct 487344 CGTTGACTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCC 487285 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 ||| | ||||| |||||||||||| ||| | ||||| ||||| ||| ||| || Sbjct 487284 AGCAAAGATAAGCCTCTGCTGATCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTT 487225 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || ||| ||| ||||| ||||| ||||| || || | || Sbjct 487224 GACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGT 487165 Query 19024 TTTGACAAAAATTTGCAT 19041 ||| || || |||||||| Sbjct 487164 TTTCACGAAGATTTGCAT 487147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || ||||||||||| |||| || | |||| ||||| || || || Sbjct 487571 GTTGACTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCA 487512 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||| ||| ||| | ||||| ||||| ||| ||| || Sbjct 487511 GCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTG 487452 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || || | ||| |||| ||| || || || || |||| ||| Sbjct 487451 ACGTTATCGATCGTGTCTGAACTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTT 487392 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 487391 TTGACAAAGATCTGCAT 487375 >seq5117 Length=577398 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| ||||||||||| || || | || | | || || Sbjct 108198 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTTCCATCTTCA 108257 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | ||||| |||||||| || || | ||| || ||||| | Sbjct 108258 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 108317 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | |||||| | ||| ||| | ||||||||| || Sbjct 108318 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 108377 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || ||||| |||||||| Sbjct 108378 CCAGTAAGAGTCTTAACAAAGATTTGCAT 108406 >seq31290 Length=752448 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| | |||| ||| | || |||||||||||||| || ||||| | Sbjct 237501 TTCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTG 237560 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || |||| |||||||| ||| | || ||||||||||||||| | Sbjct 237561 CAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAG 237620 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 237621 GAATGCCTTCCTTGTC 237636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || | ||||| | ||| | ||| || ||||| || || || ||||| | Sbjct 674060 TTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGG 674001 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||||||||||| || || || | || || |||||||| ||| || Sbjct 674000 CCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGG 673941 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || ||| || || | | ||| || ||| |||| Sbjct 673940 GGATCCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCA 673881 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || | ||| ||||| || || ||||| Sbjct 673880 CCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 673832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414407423153014