Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq31290 107 2e-18 seq18898 96.9 3e-15 seq30011 93.3 4e-14 seq5684 93.3 4e-14 seq26449 91.5 1e-13 seq5117 86.0 5e-12 seq5228 84.2 2e-11 >seq31290 Length=752448 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 673795 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 673736 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 673735 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 673676 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| |||| ||||| || ||||| || ||||| | ||||||| Sbjct 673675 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 673618 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 673617 ACAAAGATCTGCATC 673603 >seq18898 Length=1135434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| || | | Sbjct 158595 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTTCGGTGAA 158654 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||| ||| || | | |||||||||| || || ||||| | Sbjct 158655 GATAAGCCGCTGCTAGTCCGATGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 158714 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 158715 GTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCAC 158774 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 158775 AAAGATCTGCATC 158787 >seq30011 Length=125740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||||||||| || || || ||||||| |||| Sbjct 34125 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGAGTACGGCCGTCCTCAAGCT 34067 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 34066 GTTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 34007 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | |||| ||| | || || || || |||| Sbjct 34006 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 33947 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 33946 TCAATGTCTTGACAAAAATCTGCAT 33922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || | ||| || || Sbjct 33905 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 33847 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || | || ||||||||||| ||| ||| | | ||||||||| Sbjct 33846 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 33787 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | || || |||| ||| ||||| || || || Sbjct 33786 CTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGT 33727 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || |||||||| Sbjct 33726 CTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 33694 >seq5684 Length=29006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||||||||| || || || ||||||| |||| Sbjct 6452 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGAGTACGGCCGTCCTCAAGCT 6394 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 6393 GTTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 6334 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | |||| ||| | || || || || |||| Sbjct 6333 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 6274 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 6273 TCAATGTCTTGACAAAAATCTGCAT 6249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || | ||| || || Sbjct 6232 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 6174 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || | || ||||||||||| ||| ||| | | ||||||||| Sbjct 6173 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 6114 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | || || |||| ||| ||||| || || || Sbjct 6113 CTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGT 6054 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || |||||||| Sbjct 6053 CTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 6021 >seq26449 Length=270109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| |||||| |||| ||| || || | Sbjct 202082 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCTGTCCTCGAGCTACTTTTCGGCGAA 202023 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||| ||| || | |||||||||| || || ||||| | Sbjct 202022 AATAAGCCGCTGCTGGTCCGGTGGAATCTCTTCCTTGTCCTGGATCTTAGCCTTGACATT 201963 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || | |||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 201962 GTCGATCATGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTAAAAGTTTTCAC 201903 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 201902 AAAGATCTGCATC 201890 >seq5117 Length=577398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| || | | Sbjct 107531 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAA 107590 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 107591 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 107650 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 107651 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCAC 107710 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 107711 GAAAATCTGCAT 107722 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| || | | ||| | ||||| ||||| ||||| | | Sbjct 112283 CTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAA 112342 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||||||||| || | | |||||||||| || || |||| | Sbjct 112343 GATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 112402 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| || ||| | ||||||||||| ||||||||||| ||||| Sbjct 112403 ATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCAC 112462 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 112463 AAAGATTTGCATC 112475 >seq5228 Length=576636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || | || || || ||||| ||| || | Sbjct 536242 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 536183 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||||| || | | ||||||||| || || ||||| | Sbjct 536182 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 536123 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||| |||| || || ||||| ||||| || |||||| Sbjct 536122 GTCG--ATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTC 536065 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 536064 ACGAAGATCTGCAT 536051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421083159078731