Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17344 113 2e-20 seq8409 113 2e-20 seq27186 111 8e-20 seq26072 111 8e-20 seq9731 111 8e-20 seq19898 109 3e-19 seq27385 107 1e-18 seq27188 107 1e-18 seq27010 107 1e-18 seq25803 107 1e-18 seq25334 107 1e-18 seq11119 107 1e-18 seq30790 105 3e-18 seq25557 105 3e-18 seq11409 105 3e-18 seq3895 104 1e-17 seq29299 102 4e-17 seq3645 100 1e-16 >seq17344 Length=424804 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 113590 AAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 113531 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 113530 TCTAACCAACTGAGCTAATAGGCC 113507 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 115323 AAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 115264 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 115263 TCTAACCAACTGAGCTAATAGGCC 115240 >seq8409 Length=20976 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 6565 AAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 6506 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 6505 TCTAACCAACTGAGCTAATAGGCC 6482 >seq27186 Length=227479 Score = 111 bits (122), Expect = 8e-20 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11443 TAAAAAATC---AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 31873 TAAAAAAGCCAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 31932 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||| ||||| Sbjct 31933 CGACGCTCTAACCAACTGAGCTAATAGGCCG 31963 >seq26072 Length=290952 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 136047 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 135988 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 135987 CTGAGCTAATGGGCC 135973 >seq9731 Length=19237 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 128 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 187 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 188 CTGAGCTAATGGGCC 202 >seq19898 Length=398715 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 68142 AAAAATTGACTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 68201 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 68202 GCTCTAACCAACTGAGCTAATAGGCCG 68228 >seq27385 Length=217952 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| || ||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 195666 AAAACATTAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 195725 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 195726 GACGCTCTAACCAACTGAGCTAATAGGCC 195754 >seq27188 Length=2984 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 364 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 305 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 304 ACTGAGCTAATAGGCC 289 >seq27010 Length=3162 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| || ||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1884 AAAACATTAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1825 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1824 GACGCTCTAACCAACTGAGCTAATAGGCC 1796 >seq25803 Length=310286 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 105386 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 105327 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 105326 ACTGAGCTAATAGGCC 105311 >seq25334 Length=344197 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 48461 AAAAACAACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 48402 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 48401 CTCTAACCAACTGAGCTAATAGGCC 48377 >seq11119 Length=1240086 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 893881 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 893822 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 893821 TGAGCTAATAGGCCGT 893806 >seq30790 Length=96847 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 27742 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 27683 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 27682 CTGAGCTAATAGGCC 27668 >seq25557 Length=330632 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 226072 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 226013 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 226012 AACTGAGCTAATAGGCC 225996 >seq11409 Length=17537 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 17029 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 16970 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 16969 AACTGAGCTAATAGGCC 16953 >seq3895 Length=609050 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 561106 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 561047 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 561046 TGAGCTAATAGGCC 561033 >seq29299 Length=572038 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| || |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 564149 AAAAATCATTTTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 564208 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 564209 CGCTCTAACCAGCTGAGCTAATAGGCC 564235 >seq3645 Length=668 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 74 AAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 15 Query 11506 TCTRACCAACTGAG 11519 ||| |||||||||| Sbjct 14 TCTAACCAACTGAG 1 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261386888790556