Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq26952 154 2e-33 seq1140 154 2e-33 seq24455 152 8e-33 seq7742 152 8e-33 seq27319 140 5e-29 seq29176 95.1 2e-15 >seq26952 Length=241022 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 179408 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 179467 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | ||||| |||||||| | || Sbjct 179468 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGAG 179527 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 179528 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 179587 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 179588 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 179647 >seq1140 Length=52639 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 36645 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 36586 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | ||||| |||||||| | || Sbjct 36585 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGAG 36526 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 36525 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 36466 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 36465 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 36406 >seq24455 Length=356584 Score = 152 bits (168), Expect = 8e-33 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 69768 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCAAT 69827 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || ||| ||| |||| || |||| Sbjct 69828 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGAC 69887 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| ||| || | ||| || || Sbjct 69888 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA 69947 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 69948 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 70007 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 70008 CAGGACTCTTTATGGATTTGGGGGTTAAT 70036 >seq7742 Length=22351 Score = 152 bits (168), Expect = 8e-33 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 10408 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCAAT 10467 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || ||| ||| |||| || |||| Sbjct 10468 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGAC 10527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| ||| || | ||| || || Sbjct 10528 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA 10587 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 10588 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 10647 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 10648 CAGGACTCTTTATGGATTTGGGGGTTAAT 10676 >seq27319 Length=220210 Score = 140 bits (154), Expect = 5e-29 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 153490 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 153549 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | ||||| || |||||| || ||| ||| |||| || |||| Sbjct 153550 CGGCGTCTGGCTCGTAGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 153609 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||||||||| | ||| ||| |||| || || | || || ||| Sbjct 153610 CGTGGCGTTCTCAAGATCTTCTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 153669 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | ||||| || || | ||||| |||| ||||| | || | || ||| Sbjct 153670 CACGCTAGGAGGAAGACGGTGACGGCGATGGACGTCGTGTATGCGCTCAAGAGGCAGGGC 153729 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 153730 AGGACTCTCTACGGGTTTGGTGGTTAA 153756 >seq29176 Length=818675 Score = 95.1 bits (104), Expect = 2e-15 Identities = 184/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 465537 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 465595 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| | | || || || ||| | || || | |||| || |||| Sbjct 465596 TCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 465655 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||| | ||| ||| || | |||||| | ||| || || Sbjct 465656 ACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 465715 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| || || | || | || || Sbjct 465716 GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTACGCGCTCAAGAGGCAGGG 465775 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 465776 CAGGACTCTCTATGGGTTTGGTGGTTGAT 465804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79045273817583