Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3895 167 3e-36 seq26974 154 2e-32 seq28498 91.5 2e-13 >seq3895 Length=609050 Score = 167 bits (184), Expect = 3e-36 Identities = 410/615 (67%), Gaps = 10/615 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || |||||||||||||| |||||||| |||| |||| ||||| || | Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCA 33414 | || | ||| ||||||| || |||||||| ||||||||||||| || || | || Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGG-CGCAAAAACTCCCT 437884 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33471 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 437883 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 437824 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 437823 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 437767 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 437766 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 437707 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 437706 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 437647 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710 |||| | ||| || || || || | | |||| || | || || || || ||||| Sbjct 437646 TCGGCGACCTGGACCTCCGT-CATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTC 437588 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || || || | || || || | || | || ||||| | ||||| Sbjct 437587 GGAGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGC 437528 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 437527 CTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTC 437468 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| || | || || || ||||| || ||||| || Sbjct 437467 GGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATC 437408 Query 33891 TGGATTTGGTGCAAG 33905 |||||||| || || Sbjct 437407 GGGATTTGGGGCTAG 437393 >seq26974 Length=240166 Score = 154 bits (170), Expect = 2e-32 Identities = 400/607 (66%), Gaps = 6/607 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 149185 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGA 149126 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || ||||| ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 149125 AGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 149066 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33472 | ||||| || ||||| || |||||| || || |||||||| | || | | | || Sbjct 149065 AGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 149006 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| ||| | ||||| |||||||| || || || |||| |||||| | Sbjct 149005 CGTC---GATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 148949 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| ||| | | | ||||| | || ||| | || || || | | || Sbjct 148948 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGCG 148889 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 148888 AGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT 148829 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 ||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 148828 CGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCG 148769 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 ||| || || || || | || || | || || | ||| ||||| | ||||| | Sbjct 148768 AGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATT 148709 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | ||| || | || | || || || ||| | ||||||||||| || || | Sbjct 148708 CCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGG 148649 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTG 33892 | || || ||||| | |||||| || || ||||| || || || |||| || || Sbjct 148648 CTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATGCAGAATCGATCTG 148589 Query 33893 GATTTGG 33899 | || || Sbjct 148588 GGTTCGG 148582 >seq28498 Length=175162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 163568 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 163627 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| || ||||| || Sbjct 163628 GGGTTTTGAAGCCAAAGTA 163646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622692328939960