Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3895 104 6e-17 >seq3895 Length=609050 Score = 104 bits (114), Expect = 6e-17 Identities = 312/478 (65%), Gaps = 23/478 (5%) Strand=Plus/Plus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 |||||||| | | || || |||||| || || || |||||||| || || ||| Sbjct 437834 TTCGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTT 437893 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || || || |||||||| ||||| || | | |||||||| |||| || ||||| ||| Sbjct 437894 TGCGCCATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAG 437953 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT 22662 ||||| |||||||||||||| || |||||| ||||| || | || || Sbjct 437954 TTAATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCTGTTGTA-------CAG 438006 Query 22663 ATCATTCA----TAAACT--TCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | ||| | || || | | || | || | | || | | | || || Sbjct 438007 TTTATTGAGGACGAAGCTAAGCGAGGAGAGAGTGAAGGCGTTA--GTGAAGGAGGCGGTG 438064 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGT----ATCAA 22772 || | || | ||| | ||||| ||| | || || | | ||||| || || Sbjct 438065 GAGATAGAGAGAGAGTTTGTGTGCGATGCGCTGCC-GT---GCGCGTTGGTGGGGATGAA 438120 Query 22773 TGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG 22832 || |||| |||||| || || | ||||| |||||| | | || | | || || Sbjct 438121 TGGAGAATTGATGAGTCAGTACATAGAGTTTGTCGCAGATAGATTGTTGGGTGCGCTTGG 438180 Query 22833 TTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGA 22892 || | |||| || | || | ||||| ||||| |||||||| || || || || | Sbjct 438181 GTACGGGAAGCTGTACAGTGTGGCGAATCCTTTTGATTGGATGGAGCTGATCTCGCTCCA 438240 Query 22893 AGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||| ||||| |||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 438241 AGGGAAGACTAATTTCTTTGAAAAGAGAGTTGGGGAATATCAAAAGGCTTCTGTTATG 438298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302807017895642