Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5228 107 2e-18 seq30011 105 6e-18 seq5684 105 6e-18 seq31290 96.9 3e-15 seq5117 95.1 1e-14 >seq5228 Length=576636 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||||||| |||| |||||| | | Sbjct 536279 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 536338 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 536339 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 536398 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||| | ||||| | | | | | | |||||| ||| Sbjct 536399 CAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACAAC 536458 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 536459 ATCCAAAAAGAATCCAC 536475 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 536047 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 536106 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 536107 CTCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 536166 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 536167 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 536226 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 536227 CAACATCCAGAAGGAGTCAAC 536247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| ||| | ||||| ||||||||||| | | Sbjct 487147 ATGCAAATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 487206 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || || || || ||||| Sbjct 487207 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGATCAG 487266 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || ||||| ||||| || | | | | | | |||||| ||| Sbjct 487267 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 487326 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 487327 ATACAGAAGGAGTCAAC 487343 >seq30011 Length=125740 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | ||||| ||||||||||| | Sbjct 33007 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 33066 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 33067 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGAC 33126 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || |||||||| | | | | | | |||||| Sbjct 33127 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTAC 33186 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| ||||| || ||||| | ||| Sbjct 33187 AATATCCAAAAGGAATCGACGCTTCATCTTGTG 33219 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| ||||||||||| | | Sbjct 33466 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 33525 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 33526 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 33585 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||| ||||||||||| || | | | | | |||||| || Sbjct 33586 CAGAGACTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 33645 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 33646 ATCCAGAAGGAATCAACTCTTCA 33668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||| ||| | | Sbjct 33238 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 33297 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 33298 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 33357 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | || || ||||||||||| || | | | | | | ||||| || Sbjct 33358 CAGAGACTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAT 33417 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 33418 ATCCAGAAGGAATCAACTCTTCA 33440 >seq5684 Length=29006 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | ||||| ||||||||||| | Sbjct 4878 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 4937 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 4938 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGAC 4997 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || |||||||| | | | | | | |||||| Sbjct 4998 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTAC 5057 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| ||||| || ||||| | ||| Sbjct 5058 AATATCCAAAAGGAATCGACGCTTCATCTTGTG 5090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| ||||||||||| | | Sbjct 5337 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5396 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5397 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5456 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||||||||| || | | | | | |||||| || Sbjct 5457 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5516 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 5517 ATCCAGAAGGAATCAACTCTTCA 5539 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| ||||||||||| | | Sbjct 5565 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5624 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5625 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5684 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||||||||| || | | | | | |||||| || Sbjct 5685 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5744 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 5745 ATCCAGAAGGAATCAACTCTTCA 5767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| ||||||||||| | | Sbjct 5793 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5852 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5853 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5912 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||||||||| || | | | | | |||||| || Sbjct 5913 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5972 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 5973 ATCCAGAAGGAATCAACTCTTCA 5995 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||| ||| | | Sbjct 5109 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 5168 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5169 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5228 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | | | | | | ||||| || Sbjct 5229 CAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAT 5288 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 5289 ATCCAGAAGGAATCAACTCTTCA 5311 >seq31290 Length=752448 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||| | | || || ||| | ||| Sbjct 237636 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAA 237577 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||||| || || ||||||||||||||||| || || ||| |||| || || | Sbjct 237576 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGTCCT 237518 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 237517 GAGGCTCAGGGGAGGAACTATGAT 237494 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || || || |||| ||| | || || ||| | Sbjct 674059 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 674118 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| |||||||| || || ||||| || || Sbjct 674119 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 674178 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | || ||||||||| ||||| |||| | ||| || |||||| || Sbjct 674179 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACTCTCGCCGATTACAA 674238 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| || || || Sbjct 674239 CATTCAAAAGGAGTCCAC 674256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| | || || ||| | | Sbjct 673832 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 673891 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| |||||||| || || || || || || Sbjct 673892 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGGATCCCCCCGGACCAG 673951 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| || || || | | | | | | |||||||||| Sbjct 673952 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 674011 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | || | ||||| | |||| |||||| Sbjct 674012 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGA 674059 >seq5117 Length=577398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || || | || || || | Sbjct 108634 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 108575 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| || ||||| ||||| ||||| Sbjct 108574 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 108515 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || ||||| || ||||||| | | | | | || || ||| Sbjct 108514 CAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 108455 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || |||||||| |||| || ||| Sbjct 108454 ATTCAGAAGGAATCTACCCTTCACTTGGTG 108425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||||||| | ||||| | || || || Sbjct 148178 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 148119 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||| ||| ||||| || || || || || ||||| Sbjct 148118 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 148059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || ||||| || ||||||| || | | || |||||| Sbjct 148058 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 147999 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || |||||||| || |||| || || Sbjct 147998 ATCCAGAAAGAATCCACTCTTCACTTGGT 147970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429764494633305