Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5117 96.9 3e-15 seq31290 87.8 2e-12 >seq5117 Length=577398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 |||||||||||||| || || ||||| |||||||| || || | || | |||| | Sbjct 107950 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 107891 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | || || || || ||||| || ||| | || || | Sbjct 107890 G--ACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACC 107833 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||| | |||| ||| ||||| || | ||||||| | ||| | || ||||| | Sbjct 107832 AGCAGAGATTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACA 107773 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| || || || || | ||| ||||||||||| |||| ||||||| Sbjct 107772 ACATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGACTGCGTGGAGGAA 107722 >seq31290 Length=752448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| | || |||||||| ||||| || | ||| || |||||||| ||| Sbjct 237636 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAA 237577 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || ||| | || ||||||||||||||||| ||||| || | || |||| || Sbjct 237576 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGTCCTG 237517 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 237516 AGGCTCAGGGGAGGAA 237501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425174326423720