Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq31290 114 1e-20 seq17788 111 1e-19 seq5228 104 2e-17 seq5117 87.8 1e-12 seq32067 82.4 6e-11 >seq31290 Length=752448 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||| ||||| || ||||| || ||||||| ||| | ||||||||| || Sbjct 674034 TGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCGTCCTCCAGCTGC 673975 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || |||| ||| |||||| || | ||||||||||| || | | Sbjct 673974 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATCCCCTCTTTGTCCTGGATCTTC 673915 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| |||| |||||| || || |||||| Sbjct 673914 GCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTC 673855 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 673854 AGAGTCTTGACGAAGATCTGCAT 673832 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||| | ||| | | ||||| | || Sbjct 674262 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTTCGGCCATCCTCGAGCTGC 674203 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| |||||| ||| | ||||||||||| || || Sbjct 674202 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTG 674143 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | |||| |||| |||||| || || |||| Sbjct 674142 GC--CTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGG 674085 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 ||| ||| ||||| || ||||||||| Sbjct 674084 TCAACGTCTTGACGAAGATCTGCATT 674059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || || ||||||||||| ||||| || || || Sbjct 237503 CCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGCA 237562 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||||||||| || ||| | || || | ||| || ||| ||| Sbjct 237563 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAGGA 237622 Query 16829 ACGCCCTCTTTGTC 16842 | ||| || ||||| Sbjct 237623 ATGCCTTCCTTGTC 237636 >seq17788 Length=1137600 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || |||||||||||||| Sbjct 830981 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 831040 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 831041 CAAGGTTCGCCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 831100 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 831101 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCAC 831160 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| || ||||| || || || || ||||| || || |||||||| || Sbjct 831161 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 831211 >seq5228 Length=576636 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| ||||| |||||||| ||||||||||| |||||| Sbjct 487373 CCTCCGCGGAGACGAAGGACGAGATGGAGCGTTGACTCCTTCTGTATGTTGTAATCGGCC 487314 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| | ||||||| ||| || ||| || Sbjct 487313 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGGGGG 487254 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | | |||||| | ||| | Sbjct 487253 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 487194 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || ||||| || ||||| ||||| || || || ||||| Sbjct 487193 TCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 487147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || || ||||| || ||| Sbjct 487601 CCACCACGGAGCCTGAGGACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCC 487542 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||| ||||| ||| | || |||| ||| |||||| || Sbjct 487541 AAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 487482 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | ||||| ||| Sbjct 487481 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTATCGATCGTGTCTGAACTCTCAACC 487422 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || ||||| || ||||||||||| |||||||| Sbjct 487421 TCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 487375 >seq5117 Length=577398 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||| || || || ||||| || ||||||||||| | | || | ||| Sbjct 108651 AGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAAAGTGTGCGACCATCC 108710 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||||||| ||| ||||||||| || ||||| || | || || ||||| Sbjct 108711 TCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 108770 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||||| | ||| || | |||||| | Sbjct 108771 TGAATCTTGGCT--TTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAG 108828 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || ||||| |||||||| Sbjct 108829 TTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 108862 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | |||||| ||||||||||| || |||||||| || || Sbjct 147724 CCTCCACGGAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 147783 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||| || ||| | || | || ||| ||||| || Sbjct 147784 AGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 147843 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || |||||| | | | | ||||| ||| Sbjct 147844 ATCCCCTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATTGTGTCCGAACTCTCAA 147901 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||||| || || || || |||||||||||||| Sbjct 147902 CCTCCAATGTGATGGTTTTTCCAGTGAGTGTCTTCACAAAAATCTGCAT 147950 >seq32067 Length=720804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA-TTG 16791 || || |||||||||||||| |||||||| ||||| || | ||| ||| || ||| Sbjct 300132 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGCGAGTCCAGCCGTTCTCAAAATTG 300191 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 ||| || | || |||| ||| ||| || || | |||| ||||| ||| | Sbjct 300192 CCTGCGGGCGAAGATGAGCCTCTGCTGGCCCGGCGGAATCCCCTTCTTGTCCTGAATCTT 300251 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | | |||| | |||| |||| ||||||||||| ||||| Sbjct 300252 CGTCTTCACGTTGTCGATCGCGTCGGAGCTCTCCACCTCCAGAGTGATGGTTTTCCCGGT 300311 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 | ||| ||||| || ||||||||| Sbjct 300312 CGACGTCTTGACGAAGATCTGCATT 300336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404926406725690