Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3895 176 6e-39 seq26974 147 3e-30 seq28498 91.5 2e-13 seq27564 84.2 3e-11 >seq3895 Length=609050 Score = 176 bits (194), Expect = 6e-39 Identities = 405/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || |||||||||||||| |||||||| |||| ||||| ||||| || | Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | ||| ||||||| || |||||||| ||||||||||||| |||||| | || Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGG-CGCAAAAACTCCCT 437884 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828 || |||||||| || || || ||||| || || | |||||| | || | | | Sbjct 437883 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 437824 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| ||||| ||| |||||| || || || | ||||| Sbjct 437823 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 437767 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 437766 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 437707 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | ||| Sbjct 437706 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 437647 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | ||| || || || || | | | || | || || || || ||||| Sbjct 437646 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 437587 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 |||||| || || || | || || || | || | || ||||| | ||||| Sbjct 437586 GAGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 437527 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 437526 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 437467 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 33248 || || || ||||| | ||| || | | || ||||| || || || ||||| || Sbjct 437466 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 437407 Query 33249 GGATTT 33254 |||||| Sbjct 437406 GGATTT 437401 >seq26974 Length=240166 Score = 147 bits (162), Expect = 3e-30 Identities = 399/605 (66%), Gaps = 8/605 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 149185 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGA 149126 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || ||||| ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 149125 AGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 149067 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828 || ||||| || ||||| || ||||| || || |||||||| | || | | | | Sbjct 149066 GAGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 149007 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| | ||||| |||||||| || || || |||| || || Sbjct 149006 CCGTC---GATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 148950 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | || ||| | | | ||||| | || ||| | || || || | | || Sbjct 148949 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGC 148890 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | ||| Sbjct 148889 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 148830 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 148829 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCC 148770 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 148769 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGAT 148710 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 148709 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 148650 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 33248 || || || ||||| | |||||| || | || || || ||||| || |||| || | Sbjct 148649 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATGCAGAATCGATCT 148590 Query 33249 GGATT 33253 || || Sbjct 148589 GGGTT 148585 >seq28498 Length=175162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 163568 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 163627 Query 63645 AAGTTTTAAAACCAAAATA 63663 ||||| || ||||| || Sbjct 163628 GGGTTTTGAAGCCAAAGTA 163646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || |||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 163120 CCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 163179 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 163180 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 163239 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 163240 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 163299 Query 63407 CCCTCTATACTATCATCCATCAT 63429 || || ||||||||||| |||| Sbjct 163300 CCTTCAATACTATCATCTTTCAT 163322 >seq27564 Length=213285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||| ||||| | |||||||| || || ||| Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 94122 CCTTCAATACTATCATCTTTCATG 94145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633372757387600