Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3895 224 1e-53 seq2339 93.3 5e-14 seq27319 89.7 6e-13 seq4117 89.7 6e-13 seq27888 86.0 7e-12 seq6565 86.0 7e-12 seq5673 86.0 7e-12 seq3340 86.0 7e-12 seq27197 84.2 2e-11 seq29344 82.4 8e-11 >seq3895 Length=609050 Score = 224 bits (248), Expect = 1e-53 Identities = 596/900 (66%), Gaps = 19/900 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| |||||||||||| | |||||||||||||| ||||| |||| Sbjct 438298 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTG 438239 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905 | || ||| | || | | | |||||| | | || ||| | ||| Sbjct 438238 GAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCCACACTGTACAGCTTCCCGTACCC 438179 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | | | ||| |||||||| || ||||| |||||||||||| |||||| || | | Sbjct 438178 A--AGCGCACCCAACAATCTATCTGCGACAAACTCTATGTACTGACTCATCAATTCTCCA 438121 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| || || || || ||| || || ||| |||| || | || Sbjct 438120 TTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCAC 438062 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGT 93083 || || |||| | | | ||||| || | | | || || | |||| ||| Sbjct 438061 CGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTCGTCCTCAATAAACTGT 438003 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| | |||||| || ||| || | ||| || ||||| || || ||||| || || Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 ||||||| || || | | || || || |||||||||||||| | |||||| || | Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTG 437883 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | || || || || |||||| ||||| || | | | || || ||| | | || Sbjct 437882 AGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG- 437824 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | |||||| ||||| ||||| |||||| || | || || | || |||| Sbjct 437823 --CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGA 437766 Query 93324 TAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | |||| ||| || || | | ||||| || ||| ||||| || || | | || Sbjct 437765 TGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCA 437709 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || |||||||| || |||| ||||| || || |||||||| |||||||| | | Sbjct 437708 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 437649 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| || || || || | |||| || || ||| || || | Sbjct 437648 CCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGT 437589 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| ||||| || || || | | ||||| | || || ||||| ||| | | || Sbjct 437588 CGGAGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGG 437529 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| | | ||||||| |||||||| ||||| || | ||||||||||| |||| Sbjct 437528 CCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTT 437469 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| |||| Sbjct 437468 CGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGAT 437409 >seq2339 Length=646888 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 329570 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 329627 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||||||| || Sbjct 329628 CGTGGGTTCAAATCCCACTTCTGACAAATTTTT 329660 >seq27319 Length=220210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/104 (80%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 176287 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 176230 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 |||||||||| || ||||| ||||||| | ||||| || ||| Sbjct 176229 GCGTGGGTTCAAATCCCACTTCTGACAATTGTTTATTTGATTTT 176186 >seq4117 Length=604974 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 361769 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 361828 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| |||||||||| Sbjct 361829 GCGTGGGTTCAAATCCCACTTCTGACAAATT 361859 >seq27888 Length=200642 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 64009 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 63952 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 63951 TTCAAATCCCACAGCTGTCAAATT 63928 >seq6565 Length=559758 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/102 (80%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 540089 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 540146 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| ||| || ||||||| || Sbjct 540147 TTCAAATCCCACAGCTGTCAAA--ATT-TTACAATTTTTTTT 540185 >seq5673 Length=106834 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 46497 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 46554 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || |||||| ||| |||| Sbjct 46555 TGGGTTCAAATCCCACAGCTGTCAAA 46580 >seq3340 Length=622102 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 444792 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 444849 Query 126328 TTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366 ||| || |||||| ||| || |||| |||| ||||||| Sbjct 444850 TTCAAATCCCACAGCTGTCAGACTATTAATATTATAATTTTT 444891 >seq27197 Length=226831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 199472 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 199529 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 199530 CGTGGGTTCAAATCCCACTTCTGACA 199555 >seq29344 Length=146955 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 128261 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 128204 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 128203 GCGTGGGTTCAAATCCCACTTCTGACA 128177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556632967364440