Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03]
32,731 sequences; 404,954,971 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3895 224 1e-53
seq2339 93.3 5e-14
seq27319 89.7 6e-13
seq4117 89.7 6e-13
seq27888 86.0 7e-12
seq6565 86.0 7e-12
seq5673 86.0 7e-12
seq3340 86.0 7e-12
seq27197 84.2 2e-11
seq29344 82.4 8e-11
>seq3895
Length=609050
Score = 224 bits (248), Expect = 1e-53
Identities = 596/900 (66%), Gaps = 19/900 (2%)
Strand=Plus/Minus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||||||| | ||||| |||||||||||| | |||||||||||||| ||||| ||||
Sbjct 438298 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTG 438239
Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905
| || ||| | || | | | |||||| | | || ||| | |||
Sbjct 438238 GAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCCACACTGTACAGCTTCCCGTACCC 438179
Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965
| | | | ||| |||||||| || ||||| |||||||||||| |||||| || | |
Sbjct 438178 A--AGCGCACCCAACAATCTATCTGCGACAAACTCTATGTACTGACTCATCAATTCTCCA 438121
Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024
||||| || | | ||| || || || || ||| || || ||| |||| || | ||
Sbjct 438120 TTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCAC 438062
Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGT 93083
|| || |||| | | | ||||| || | | | || || | |||| |||
Sbjct 438061 CGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTCGTCCTCAATAAACTGT 438003
Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143
||| | |||||| || ||| || | ||| || ||||| || || ||||| || ||
Sbjct 438002 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGA 437943
Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203
||||||| || || | | || || || |||||||||||||| | |||||| || |
Sbjct 437942 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTG 437883
Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263
| || || || || |||||| ||||| || | | | || || ||| | | ||
Sbjct 437882 AGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG- 437824
Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323
| | |||||| ||||| ||||| |||||| || | || || | || ||||
Sbjct 437823 --CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGA 437766
Query 93324 TAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380
| |||| ||| || || | | ||||| || ||| ||||| || || | | ||
Sbjct 437765 TGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCA 437709
Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440
| || |||||||| || |||| ||||| || || |||||||| |||||||| | |
Sbjct 437708 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 437649
Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500
| || | || ||| || || || || | |||| || || ||| || || |
Sbjct 437648 CCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGT 437589
Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560
|||| ||||| || || || | | ||||| | || || ||||| ||| | | ||
Sbjct 437588 CGGAGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGG 437529
Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620
||||| | | ||||||| |||||||| ||||| || | ||||||||||| ||||
Sbjct 437528 CCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTT 437469
Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680
| ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| ||||
Sbjct 437468 CGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGAT 437409
>seq2339
Length=646888
Score = 93.3 bits (102), Expect = 5e-14
Identities = 77/93 (83%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 329570 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 329627
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
||||||||| || ||||| |||||||||| ||
Sbjct 329628 CGTGGGTTCAAATCCCACTTCTGACAAATTTTT 329660
>seq27319
Length=220210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 83/104 (80%), Gaps = 6/104 (6%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 176287 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 176230
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364
|||||||||| || ||||| ||||||| | ||||| || |||
Sbjct 176229 GCGTGGGTTCAAATCCCACTTCTGACAATTGTTTATTTGATTTT 176186
>seq4117
Length=604974
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320
||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct 361769 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 361828
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||||| || ||||| ||||||||||
Sbjct 361829 GCGTGGGTTCAAATCCCACTTCTGACAAATT 361859
>seq27888
Length=200642
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 64009 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 63952
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| ||||||
Sbjct 63951 TTCAAATCCCACAGCTGTCAAATT 63928
>seq6565
Length=559758
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/102 (80%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 540089 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 540146
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||| || |||||| ||| |||| ||| || ||||||| ||
Sbjct 540147 TTCAAATCCCACAGCTGTCAAA--ATT-TTACAATTTTTTTT 540185
>seq5673
Length=106834
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323
||| ||| |||||||||||||||||||||||||||||| | |||||| || | |||
Sbjct 46497 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 46554
Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349
||||||| || |||||| ||| ||||
Sbjct 46555 TGGGTTCAAATCCCACAGCTGTCAAA 46580
>seq3340
Length=622102
Score = 86.0 bits (94), Expect = 7e-12
Identities = 81/102 (79%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 444792 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 444849
Query 126328 TTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366
||| || |||||| ||| || |||| |||| |||||||
Sbjct 444850 TTCAAATCCCACAGCTGTCAGACTATTAATATTATAATTTTT 444891
>seq27197
Length=226831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 199472 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 199529
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 199530 CGTGGGTTCAAATCCCACTTCTGACA 199555
>seq29344
Length=146955
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 128261 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 128204
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 128203 GCGTGGGTTCAAATCCCACTTCTGACA 128177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556632967364440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |