Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq31623 134 3e-26 seq29733 93.3 9e-14 seq25837 93.3 9e-14 seq18011 93.3 9e-14 seq10231 93.3 9e-14 seq7787 93.3 9e-14 seq27173 91.5 3e-13 seq11119 91.5 3e-13 seq6675 91.5 3e-13 seq19787 87.8 4e-12 seq1116 87.8 4e-12 >seq31623 Length=1563436 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| |||||||| |||||| || | || ||||| || | | |||||| | ||| Sbjct 1318213 TGGTTGATGGCCTGAAGCCAGGCCAAAGGAAAATCCTTTTCTGCTCTTTCAAGAGAAACT 1318154 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | ||||| || || |||||||| ||||||||||| ||||| ||||| || | Sbjct 1318153 TTATCAAAGAAGCGAAAGTTGCTCAGTTCTCTGGTTATGTTTCCGAGCATTCTGCTTATC 1318094 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 ||||||||||||| ||||| | |||| |||| ||||||||||| | |||||||| Sbjct 1318093 ATCACGGTGAGCAAAGTCTTGCCAGCACCATCTTAGGTATGGCACAGGATTTTGTGGGCA 1318034 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 | |||||||| ||| | || | || || || || ||||| ||||| Sbjct 1318033 GCAACAACATTAACCTTCTTCAGCCTAATGGCCAATTTGGCACTCGT 1317987 >seq29733 Length=805134 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 259699 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 259758 Query 142563 CCCCAC 142568 |||||| Sbjct 259759 CCCCAC 259764 >seq25837 Length=998139 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 924752 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 924693 Query 142563 CCCCAC 142568 |||||| Sbjct 924692 CCCCAC 924687 >seq18011 Length=419243 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 401723 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 401664 Query 142563 CCCCAC 142568 |||||| Sbjct 401663 CCCCAC 401658 >seq10231 Length=516754 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 162424 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 162365 Query 142563 CCCCAC 142568 |||||| Sbjct 162364 CCCCAC 162359 >seq7787 Length=547688 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 56358 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56417 Query 142563 CCCCAC 142568 |||||| Sbjct 56418 CCCCAC 56423 >seq27173 Length=1865913 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 822096 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 822155 Query 142564 CCCAC 142568 ||||| Sbjct 822156 CCCAC 822160 >seq11119 Length=1240086 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 720054 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 719995 Query 142564 CCCAC 142568 ||||| Sbjct 719994 CCCAC 719990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 721094 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 721035 Query 142564 CCCAC 142568 ||||| Sbjct 721034 CCCAC 721030 >seq6675 Length=1275739 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 74969 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 74910 Query 142564 CCCAC 142568 ||||| Sbjct 74909 CCCAC 74905 >seq19787 Length=399118 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 116470 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 116411 Query 142563 CCCCAC 142568 |||||| Sbjct 116410 CCCCAC 116405 >seq1116 Length=1452508 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1037165 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1037224 Query 142563 CCCCAC 142568 |||||| Sbjct 1037225 CCCCAC 1037230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027405760256771