Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5117 95.1 9e-15 seq30011 82.4 5e-11 >seq5117 Length=577398 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| ||||||||| | ||| || | Sbjct 108406 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 108347 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | || |||| Sbjct 108346 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 108287 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || |||||| || || | ||||| |||||| Sbjct 108286 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCCGACTACAAT 108227 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || |||||||| |||| | || | || ||||| Sbjct 108226 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAGG 108180 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| | || |||| | | Sbjct 112246 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAAGCTCG 112187 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| ||||| || || | || | |||| Sbjct 112186 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 112127 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || |||||||||||||||||||| || ||| | || | || || ||||| Sbjct 112126 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCAGACTACAAC 112067 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 || ||||||||||| || |||||| ||||| | ||| Sbjct 112066 ATCCAGAAGGAATCAACCCTTCATTTGGTACTTCGT 112031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | |||| ||||| | ||||||||||| |||||||| || Sbjct 147857 GATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAG 147798 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| | || |||||||| || |||||||| || ||||| ||| | || | Sbjct 147797 GATGGAAGGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTC 147738 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 147737 CGTCTCCGTGGAGG 147724 >seq30011 Length=125740 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| |||||||| || || ||||| || || ||| ||||||||| Sbjct 33581 ACCAGCAGAGACTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATT 33640 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| ||||||||||| |||||||| Sbjct 33641 ACAATATCCAGAAGGAATCAACTCTTCA 33668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357981940771774