Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26974 223 7e-53 seq3895 183 6e-41 >seq26974 Length=240166 Score = 223 bits (246), Expect = 7e-53 Identities = 452/663 (68%), Gaps = 10/663 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCG 42342 |||| || ||| ||| |||||| ||||||||||| || | || | || ||||| | Sbjct 148611 GATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGG 148669 Query 42343 CCGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 | |||||| | |||||| | |||||| | ||| | ||||| || || | | |||| Sbjct 148670 CGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG-TGGGAATCCCTAACGGCCGACGAG 148728 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| ||| || | || ||||||||||||||||| ||||| || ||| || Sbjct 148729 AAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCCTCGAA 148788 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||| ||| |||||||||||||||| || || || |||||||| |||||||||| Sbjct 148789 AACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGC 148848 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 ||||| || ||||| |||||| | ||||| || ||||| | || || | |||||| Sbjct 148849 TTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTAC 148908 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || || ||| ||| | | | | || ||| | || ||| |||| ||| | Sbjct 148909 ATAAAAAATTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTT 148968 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 || ||||| |||||||| || || |||||||| | | || | || |||| ||| Sbjct 148969 GCCAAAAAGGCCGACTGGGCCCTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAG 149025 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || ||| |||| ||| | ||| || ||||| |||||||||||| ||| | | || Sbjct 149026 AGACTGATAGCGTTTGCTTGCGTGGAAGGCATATTCTTCTCGGGCAGTTTCTGCGCGATA 149085 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||| | || || | || ||||| ||||| |||||||| ||||| || ||| Sbjct 149086 TTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGACTAACCTTCTCAAACGAGCTAATCTCG 149145 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | || || || || || | || || || || | |||| | ||| || ||| || Sbjct 149146 CGAGATGAAGGACTCCACTGCGATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAAC 149202 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 || ||||||| || || || | | |||||| |||||||| |||| |||| Sbjct 149203 AAATTAAGCGAGGAGCGCGTGAAGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAG 149262 Query 42942 TTC 42944 ||| Sbjct 149263 TTC 149265 >seq3895 Length=609050 Score = 183 bits (202), Expect = 6e-41 Identities = 359/523 (69%), Gaps = 7/523 (1%) Strand=Plus/Plus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 437480 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 437538 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| |||| || | || ||||||||||| ||||| |||||||| || Sbjct 437539 TGACGAGAAGCACTTCGTCAAGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGT 437598 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| |||||||||| ||||| ||| | |||||||| ||| Sbjct 437599 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 437658 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||||| || ||||| |||||| | ||||| || ||||| | || || | Sbjct 437659 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 437718 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| || ||| ||| ||| | || || | ||||| |||||| | || Sbjct 437719 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 437778 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 437779 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 437835 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 || ||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 437836 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 437895 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | |||| || |||||||| || | || ||||| ||| | || ||||| ||||| Sbjct 437896 -CGCCATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 437954 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || || || ||||| Sbjct 437955 TAATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 437997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943952835420560