Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17788 102 6e-17 seq5228 96.9 3e-15 seq31290 91.5 1e-13 seq5117 82.4 6e-11 >seq17788 Length=1137600 Score = 102 bits (112), Expect = 6e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| |||||||| || || || ||||||||| |||||||| || ||||| |||| Sbjct 830991 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGC 831050 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 831051 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 831110 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || || ||| | | | | || | || || || | |||| Sbjct 831111 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 831170 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || ||||| |||||||| ||||| ||||| || Sbjct 831171 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 831211 >seq5228 Length=576636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 536268 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 536209 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 536208 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 536149 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 536148 TTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAG-AGCTCTCCACTTCGAGAGT 536090 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 536089 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 536048 >seq31290 Length=752448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||| ||| || || |||||| |||||||| ||||| ||||| ||| Sbjct 674058 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 673999 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || ||||| | |||||| ||| || Sbjct 673998 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 673939 Query 34021 ACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 673938 ATCCCCTCTTTGTCC 673924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| ||| |||| ||||| || |||||| |||||||| |||||||| Sbjct 237503 CCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGCA 237562 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||||||| || || ||||||||||| | |||||||||| || Sbjct 237563 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAGGA 237622 Query 34021 ACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 237623 ATGCCTTCCTTGTCC 237637 >seq5117 Length=577398 Score = 82.4 bits (90), Expect = 6e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||||||||||| || || ||||| ||||| || ||| ||||||||| ||||||||||| Sbjct 111332 GAAACCTCCTCGAAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATC 111391 Query 33957 TGCCAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| ||| | | || || | |||||| || ||||| |||| | |||||| ||| Sbjct 111392 AG-CAAGAGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCC 111449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396904008210262