Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3895 107 2e-18 seq8009 89.7 6e-13 seq148 89.7 6e-13 seq26974 86.0 7e-12 >seq3895 Length=609050 Score = 107 bits (118), Expect = 2e-18 Identities = 369/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || || ||||| | || || ||||| | ||| ||||| | || Sbjct 437980 GTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 437921 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || || || ||||| || |||||||| || |||||||| || Sbjct 437920 GCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 437861 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | | | ||| || || | ||| ||| | ||| || | ||| Sbjct 437860 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGA---GCCGTCGATCCAATTTAACGC 437804 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||| || || || ||| || || || |||| ||| || | |||||| ||||| Sbjct 437803 CCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCTT 437744 Query 126298 TTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 ||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 437743 TTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA--T 437687 Query 126357 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 ||| ||||| || | ||||||| | ||||| ||| | ||| ||||| | Sbjct 437686 GTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC--C 437629 Query 126415 GGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 | || || | || ||||| | || || || ||||| | || || || || Sbjct 437628 GTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 437569 Query 126473 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 126532 || | | ||| | ||| | || || | || | |||| || ||||| | ||||| Sbjct 437568 AGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 437509 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 126592 | ||| ||||| || ||||| || |||||| | || || ||||| || | |||| Sbjct 437508 TGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 437449 Query 126593 CAAAGGTGGGGATACTTCAGGGGGAACA 126620 |||| || || |||| | ||||||| Sbjct 437448 CAAATTTGTGGGTACTGAATCGGGAACA 437421 >seq8009 Length=546753 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 252006 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 252065 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 252066 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 252123 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGC 11013 || | || ||||| ||||||||||| | || || || || || ||| || || | Sbjct 252124 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 252183 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||||||||| |||||||| || ||||| | Sbjct 252184 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 252242 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 252243 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 252301 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 252302 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 252361 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | | | |||||| | |||||||| ||||| | ||| Sbjct 252362 CAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 252404 >seq148 Length=65018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 25851 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 25910 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 25911 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 25968 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGC 11013 || | || ||||| ||||||||||| | || || || || || ||| || || | Sbjct 25969 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 26028 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||||||||| |||||||| || ||||| | Sbjct 26029 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 26087 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 26088 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 26146 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 26147 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 26206 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | | | |||||| | |||||||| ||||| | ||| Sbjct 26207 CAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 26249 >seq26974 Length=240166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| || || || |||||| ||||| ||||| | || Sbjct 149163 GTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGAAGGTTAGTCCCGGCATTAACCC 149104 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || ||||| || ||||| || || ||||||||||| || || ||||| || Sbjct 149103 GCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAGAATATGCCTTCCACGCA 149044 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 || ||||| | || | ||| || || Sbjct 149043 AGCAAACGCTATCAGTCTCTCCGCGAA 149017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597109200241480