Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3895 105 8e-18 seq8009 84.2 3e-11 seq148 84.2 3e-11 seq27564 82.4 9e-11 >seq3895 Length=609050 Score = 105 bits (116), Expect = 8e-18 Identities = 372/570 (65%), Gaps = 17/570 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 437980 GTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 437921 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || || || ||||| || |||||||| ||||||||||| || Sbjct 437920 GCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 437861 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || ||||| | || | ||| || |||| | | | || | ||| || | || Sbjct 437860 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 437805 Query 127710 CCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||| Sbjct 437804 CCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 437746 Query 127769 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 ||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 437745 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 437688 Query 127828 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 127885 ||| ||||| || | ||||||| | ||||| ||| | ||| ||||| Sbjct 437687 -TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC- 437630 Query 127886 TCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 || || || | || ||||| | || || || ||||| | || || || | Sbjct 437629 -CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 437571 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGAT 128003 | || | | ||| | ||| | || || | || | |||| || ||||| | ||||| Sbjct 437570 CGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 437511 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTT 128063 | | || ||||| || ||||| || |||||| | || || ||||| || | || Sbjct 437510 CTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 437451 Query 128064 CCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 |||| | || || |||| | ||||||| Sbjct 437450 CCCAAATTTGTGGGTACTGAATCGGGAACA 437421 >seq8009 Length=546753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || |||||||| || ||||| Sbjct 252006 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 252065 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 252066 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 252123 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 || | || ||||| |||||||| || | || || || || || ||| || ||| Sbjct 252124 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 252183 Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 252184 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 252242 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 252243 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 252301 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | |||||||| || ||||| || ||||||| |||| Sbjct 252302 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 252341 >seq148 Length=65018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || |||||||| || ||||| Sbjct 25851 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 25910 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 25911 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 25968 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 || | || ||||| |||||||| || | || || || || || ||| || ||| Sbjct 25969 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 26028 Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 26029 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 26087 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 26088 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 26146 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | |||||||| || ||||| || ||||||| |||| Sbjct 26147 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 26186 >seq27564 Length=213285 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 91784 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 91842 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 91843 GGCAGTTGGCATTGGTGCCACAAGAAG 91869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613256191197960