Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3895 143 4e-29 >seq3895 Length=609050 Score = 143 bits (158), Expect = 4e-29 Identities = 459/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || ||||| ||||| || ||||| || |||| || | || ||||||| Sbjct 438170 CCAACAATCTATCTGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 438111 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 438110 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 438052 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | | || | || | | |||| | || ||| | ||| || Sbjct 438051 ACTAACGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAG 437996 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| || ||||| || || ||||| |||||||| || | | | Sbjct 437995 GCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAA 437936 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-A 160040 |||||||| | ||| ||| |||||||||||| ||||| |||||| | || | || | Sbjct 437935 TCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGC-GCAAAAACTCCCTGAGAAGA 437877 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | |||||||||||| |||||||| | | ||||| | ||| | | | | | | Sbjct 437876 AAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA---GTCTCCGAGCCGT 437820 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | |||| || ||||| || |||||||||| ||| || | ||||| ||||| Sbjct 437819 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 437760 Query 160161 TAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 ||| | | || || || | || ||||| ||| | | ||| |||||||| Sbjct 437759 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 437700 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || |||||||| || || ||| |||||| |||||| Sbjct 437699 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGA 437640 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||| |||||| |||||||| | || || | || | ||||||| ||| | Sbjct 437639 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 437580 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 | ||||| || | |||||| || ||| || ||||||| | | || | |||| Sbjct 437579 CGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC---TCCC 437523 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 |||| | ||||| | | |||||| || || ||| ||||| Sbjct 437522 AGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAA 437479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794829872189360