Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03]
32,731 sequences; 404,954,971 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq30011 91.5 1e-13
seq5684 91.5 1e-13
seq5228 87.8 1e-12
seq5117 86.0 4e-12
>seq30011
Length=125740
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || | ||| | || ||| ||||| ||||| ||||||||
Sbjct 33237 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 33178
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| | || || | ||||| ||| | || || | ||||||||| |||| ||
Sbjct 33177 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 33118
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || || || | ||| | | | ||||| | ||| || |
Sbjct 33117 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 33059
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | |||||| || || || |||| ||||| ||||||||||||||
Sbjct 33058 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 33010
>seq5684
Length=29006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || | ||| | || ||| ||||| ||||| ||||||||
Sbjct 5108 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5049
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| | || || | ||||| ||| | || || | ||||||||| |||| ||
Sbjct 5048 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 4989
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || || || | ||| | | | ||||| | ||| || |
Sbjct 4988 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 4930
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | |||||| || || || |||| ||||| ||||||||||||||
Sbjct 4929 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 4881
>seq5228
Length=576636
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| |||| ||| | || || || || || |||||||| || | | | | ||
Sbjct 488045 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 487986
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | ||||| || | || || |||||||||||||||| || ||||| ||
Sbjct 487985 TCCTCAAGCTGTTTGCCTGCGAAGATCAAACGCTGCTGATCCGGTGGATTTCCTTCCTTA 487926
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| |||||| || | | | | |||||||| ||| || || ||||||||||||
Sbjct 487925 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 487866
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || | || || || || |||||||||
Sbjct 487865 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 487830
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || || || ||||||||||| ||| |||| || | ||| || ||| | ||
Sbjct 536241 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 536182
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | |||||||||||||| || | || || ||||| || || || | |||
Sbjct 536181 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 536123
Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| ||
Sbjct 536122 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 536063
Query 39708 GAAGATCTGCAT 39719
||||||||||||
Sbjct 536062 GAAGATCTGCAT 536051
>seq5117
Length=577398
Score = 86.0 bits (94), Expect = 4e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || ||||| || | |||| |||||| || || ||||| || || | | | | ||
Sbjct 147964 CGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCA 148023
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | || || || ||||||| | | ||||||||| | || | || || |||
Sbjct 148024 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 148083
Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683
|| |||||| ||| | ||| | | | ||||| | ||||| || || | ||||||
Sbjct 148084 TCTTGAATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAAT 148142
Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||| || || | ||||| || |||||||||||
Sbjct 148143 TGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 148178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347231031118523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |