Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq30011 91.5 1e-13 seq5684 91.5 1e-13 seq5228 87.8 1e-12 seq5117 86.0 4e-12 >seq30011 Length=125740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | || ||| ||||| ||||| |||||||| Sbjct 33237 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 33178 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | ||||| ||| | || || | ||||||||| |||| || Sbjct 33177 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 33118 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | | | ||||| | ||| || | Sbjct 33117 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 33059 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || |||| ||||| |||||||||||||| Sbjct 33058 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 33010 >seq5684 Length=29006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | || ||| ||||| ||||| |||||||| Sbjct 5108 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5049 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | ||||| ||| | || || | ||||||||| |||| || Sbjct 5048 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 4989 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | | | ||||| | ||| || | Sbjct 4988 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 4930 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || |||| ||||| |||||||||||||| Sbjct 4929 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 4881 >seq5228 Length=576636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | || || || || || |||||||| || | | | | || Sbjct 488045 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 487986 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| || | || || |||||||||||||||| || ||||| || Sbjct 487985 TCCTCAAGCTGTTTGCCTGCGAAGATCAAACGCTGCTGATCCGGTGGATTTCCTTCCTTA 487926 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| || | | | | |||||||| ||| || || |||||||||||| Sbjct 487925 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 487866 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || | || || || || ||||||||| Sbjct 487865 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 487830 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||||||||| ||| |||| || | ||| || ||| | || Sbjct 536241 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 536182 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || ||||| || || || | ||| Sbjct 536181 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 536123 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 536122 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 536063 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 536062 GAAGATCTGCAT 536051 >seq5117 Length=577398 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| || | |||| |||||| || || ||||| || || | | | | || Sbjct 147964 CGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCA 148023 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || ||||||| | | ||||||||| | || | || || ||| Sbjct 148024 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 148083 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || |||||| ||| | ||| | | | ||||| | ||||| || || | |||||| Sbjct 148084 TCTTGAATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAAT 148142 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || | ||||| || ||||||||||| Sbjct 148143 TGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 148178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347231031118523