Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8009 140 4e-28 seq148 140 4e-28 seq25319 87.8 2e-12 seq19232 87.8 2e-12 seq28498 82.4 9e-11 >seq8009 Length=546753 Score = 140 bits (154), Expect = 4e-28 Identities = 314/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 251988 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 252047 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 252048 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 252105 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 252106 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 252165 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 252166 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 252224 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 252225 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 252283 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 252284 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 252343 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||||| || ||| | |||||||||| | |||||| || ||||| | Sbjct 252344 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CA 252400 Query 16333 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | |||| || ||||||| Sbjct 252401 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 252443 >seq148 Length=65018 Score = 140 bits (154), Expect = 4e-28 Identities = 314/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 25833 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 25892 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 25893 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 25950 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 25951 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 26010 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 26011 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 26069 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 26070 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 26128 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 26129 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 26188 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||||| || ||| | |||||||||| | |||||| || ||||| | Sbjct 26189 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CA 26245 Query 16333 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | |||| || ||||||| Sbjct 26246 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 26288 >seq25319 Length=6653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 5361 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 5304 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 5303 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 5244 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 5243 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 5188 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 5187 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 5151 >seq19232 Length=403008 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 366712 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 366655 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 366654 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 366595 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 366594 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 366539 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 366538 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 366502 >seq28498 Length=175162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 163655 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 163596 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 163595 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 163541 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 163540 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 163481 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 163480 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 163438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620488431006320