Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq27564 118 1e-21 seq28498 113 5e-20 seq29811 89.7 6e-13 seq30846 82.4 9e-11 >seq27564 Length=213285 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||| ||| Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||||||| | || | || || || ||| Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | |||||||| ||| Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 94122 CCTTCAATACTATCATCTTTCAT 94144 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| | || | || | Sbjct 94307 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 94366 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||| ||||||| || || | ||| || || || | || || | ||| || Sbjct 94367 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 94425 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| |||||||| |||| ||| | | ||||| || || || | |||| Sbjct 94426 CATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 94485 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| || |||||||| Sbjct 94486 GGTTTTGAAGCCAAAATA 94503 >seq28498 Length=175162 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| || ||||| | ||| | |||||||| ||| | || | | |||||||||||| || Sbjct 163119 ACCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 163178 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | || || ||||| ||||||||||||| | || | || || || ||| Sbjct 163179 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 163238 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | ||||||| || | || ||||| || Sbjct 163239 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 163298 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| |||||||||||| ||||| Sbjct 163299 TCCTTCAATACTATCATCTTTCATA 163323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | ||| ||||||||||| | |||||| | | || | || | Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| |||| ||||||| ||||| | ||| || || || ||||| || | ||| | Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 |||||| ||||||||||| |||| Sbjct 163568 ACATATGCTGAGGTCTTTCTACAA 163591 >seq29811 Length=134906 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | |||| ||||| | ||| | ||| | ||| |||||||| ||| Sbjct 114315 CCCCCTTGATCAACATATTGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 114256 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||| ||||| || ||||| || || | |||||| ||| || Sbjct 114255 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 114196 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || ||| ||| ||| | ||||||| || ||||||||||| || Sbjct 114195 AGACCAATTCCTCCAGCCGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 114136 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || || |||||| |||| || ||||| || ||| Sbjct 114135 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 114094 >seq30846 Length=759859 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || ||||| |||||| ||| | || || || || || ||| Sbjct 462264 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 462323 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||||||| || ||||| | ||||||||| Sbjct 462324 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATAT 462358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561878820210840