Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5228 109 4e-19 seq29065 104 2e-17 seq30011 96.9 3e-15 seq5684 96.9 3e-15 seq14899 95.1 9e-15 seq31290 93.3 3e-14 seq5117 91.5 1e-13 seq17788 84.2 2e-11 >seq5228 Length=576636 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || ||||| || ||||||| || | | || Sbjct 488276 AGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGG 488217 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| ||||| | |||| || ||| Sbjct 488216 CCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCC 488157 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || ||||| ||||||||||| ||| Sbjct 488156 TTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTA 488097 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| |||||||| Sbjct 488096 ATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 488059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| | | || |||| |||| ||||| || ||||| Sbjct 487566 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 487507 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || |||| ||| | ||||||||||| |||||| || || Sbjct 487506 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 487447 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||| | || ||||| || || || | ||||| || Sbjct 487446 ATCGATCGTGTCTGAACTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGAC 487387 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 487386 AAAGATCTGCAT 487375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || ||||| || || ||||||| || | || | || || | ||| Sbjct 536938 ATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCAAGCTG 536879 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 536878 CTTCCCAGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCCTGAATCTT 536819 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 536818 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 536759 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 536758 CAAAGTCTTGACAAAAATTTGCAT 536735 >seq29065 Length=823268 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| | ||||| |||| || || Sbjct 405676 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCCTTTTCACCTCAAAATCAACATC 405617 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || ||||||||||||| |||| ||||| || || Sbjct 405616 AGAATGATTAAACAAAATCACCCCAACAGGACCCCTGTAATCCGCATCAATCACCCCGGC 405557 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 405556 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCTGATCTCGGCGC 405512 >seq30011 Length=125740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| | || |||| || | ||| Sbjct 34125 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 34066 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 || || || || || || | ||| ||||| | ||||| | || |||||||| ||||| Sbjct 34065 TTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATC-CCTTCCTTGTCCTGAATCT 34007 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || ||| | | | || || ||||||||||| |||||||| || || | Sbjct 34006 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 33947 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 33946 TCAATGTCTTGACAAAAATCTGCAT 33922 >seq5684 Length=29006 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| | || |||| || | ||| Sbjct 6452 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 6393 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 || || || || || || | ||| ||||| | ||||| | || |||||||| ||||| Sbjct 6392 TTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATC-CCTTCCTTGTCCTGAATCT 6334 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || ||| | | | || || ||||||||||| |||||||| || || | Sbjct 6333 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 6274 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 6273 TCAATGTCTTGACAAAAATCTGCAT 6249 >seq14899 Length=450048 Score = 95.1 bits (104), Expect = 9e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| ||||| |||| || || Sbjct 89364 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCACTTTCACCTCAAAATCAACATC 89305 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || |||||||||||| |||| ||||| || || Sbjct 89304 AGAATGATTAAACAAAATCACCCCAACAGGGCCCCTGTAATCCGCATCAATCACCCCGGC 89245 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 89244 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCCGATCTTGGCGC 89200 >seq31290 Length=752448 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||| || || || ||| |||||||| || ||||| | Sbjct 237503 CCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTTTGAATGTTATAATCTGCA 237562 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | || ||||| || ||||| ||||||||||||| ||| ||||||| ||| Sbjct 237563 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAATATCAGTCTCTGCTGATCCGGAGGA 237622 Query 48660 ACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 237623 ATGCCTTCCTTGTC 237636 >seq5117 Length=577398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| || ||| || || ||||| |||||||| | || | | | || Sbjct 107738 CAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 107797 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| |||| || ||| || || | |||| ||||||||| || Sbjct 107798 TTCAAGCTGCTTGCCTGCAAAAATCAATCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 107857 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | | || || ||| ||||||| || || || Sbjct 107858 TTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACCTCCAGAGTGATTGT 107917 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||| || |||||||| ||||| Sbjct 107918 TTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 107950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || ||||| ||||| |||| || | || Sbjct 108417 AGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGG 108476 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||||| ||| ||||| | || | ||||||| Sbjct 108477 CCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGGATGCCCTCC 108536 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || || ||||||| || Sbjct 108537 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTT 108596 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| |||||||||||||| Sbjct 108597 ATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 108634 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| | | | || | || |||| |||||| || ||||| Sbjct 107531 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAA 107590 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| || |||||||| || || || ||| Sbjct 107591 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 107650 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| || || |||||||||||||| || || || Sbjct 107651 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCAC 107710 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 107711 GAAAATCTGCAT 107722 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| |||| |||| | || Sbjct 111801 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGG 111860 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| || ||| ||||| | || | ||||||| Sbjct 111861 CCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCC 111920 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || || ||||||| || Sbjct 111921 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTT 111980 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| |||||||||||||| Sbjct 111981 ATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 112018 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| |||| ||| | ||| Sbjct 148189 AGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGA 148248 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || |||||||| || | | ||||||||| | || | ||||||| Sbjct 148249 CCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCC 148308 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || ||||||| || Sbjct 148309 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTT 148368 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| |||||||||||||| Sbjct 148369 ATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 148406 >seq17788 Length=1137600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| || || || ||| || || || ||||| || | | |||| Sbjct 830991 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGC 831050 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 831051 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 831110 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 831111 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 831170 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||| | ||||| || || ||||||||| Sbjct 831171 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 831209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380785640539113