Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq31230 87.8 4e-12 seq31046 86.0 1e-11 seq25119 86.0 1e-11 seq6699 86.0 1e-11 seq4340 86.0 1e-11 seq2450 86.0 1e-11 >seq31230 Length=1130 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/84 (85%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 324421 CGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCGA 324480 ||| |||||||||| |||||||||||||||||||||||||||||||| | ||||| | Sbjct 576 CGGGGTAGAGCAGTTTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCACG---GGTTCAA 632 Query 324481 ATCCCACCTCCGCATCCAATTTTA 324504 ||||| ||||||| || ||||| Sbjct 633 ATCCCGTCTCCGCA-ACATTTTTA 655 >seq31046 Length=92031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 31594 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 31650 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 31651 TCAAATCCCGTCTCCGCA 31668 >seq25119 Length=352517 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 30802 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 30746 Query 324477 TCGAATCCCACCTCCGCA 324494 || ||||||| |||| || Sbjct 30745 TCAAATCCCATCTCCACA 30728 >seq6699 Length=24755 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 24631 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 24687 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 24688 TCAAATCCCGTCTCCGCA 24705 >seq4340 Length=32744 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 24964 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 25020 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 25021 TCAAATCCCGTCTCCGCA 25038 >seq2450 Length=635042 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 ||||||| |||||||||| |||||||| |||||||||||||| |||||||| | ||| Sbjct 424059 ATTGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACTTTGAGGTCACG---GGT 424003 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||| || ||||||| Sbjct 424002 TCAAATCTCATCTCCGCA 423985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147109139676038