Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26974 111 3e-19 seq3895 104 4e-17 >seq26974 Length=240166 Score = 111 bits (122), Expect = 3e-19 Identities = 428/663 (65%), Gaps = 26/663 (4%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| ||||||||| ||| || ||| ||| ||| ||| ||||| ||| | Sbjct 149264 AACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCTTCACGCGCTCCTCGCTTAAT 149205 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||||| | ||| || || | || ||| || || || | ||| | ||||| || Sbjct 149204 TTGTTCCTCAGCAAGCTG---TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCT 149148 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| ||| |||| |||||| || || ||||| | ||| | || ||| | ||| Sbjct 149147 CGCGAGATTAGCTCGTTTGAGAAGGTTAGTCCCGGCATTAACCCGCGCTTTTTTAACCAA 149088 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| ||| |||||||| ||||| ||||| || ||||| | || Sbjct 149087 AATATCGCGCAGAAACTGCCCGAGAAGAATATGCCTTCCACGCAAGCAAACGCTATCAGT 149028 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| |||| | | ||| |||||| || |||||||| ||||| || Sbjct 149027 CTCTCCGCGAATGTCTCCGAGCCGTC---GATCCAATTTAGGGCCCAGTCGGCCTTTTTG 148971 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-GCTTCTTGCACTCACCTGCGTCCGC 48399 | ||| |||| ||| || | ||| || || | || || || | |||| | Sbjct 148970 GCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCT----CTT---TTCGTCGGA 148918 Query 48400 AACAT--AGGTA-GTG---AGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGC 48453 | | | ||| || || || | |||||| || ||||| | ||||| || || Sbjct 148917 ATTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTCTCGATGGC 148858 Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||| ||||| ||||||||||| | ||||| | || || |||||| | ||| || | Sbjct 148857 GATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGACTTCTTTCATGAACCTGGC 148798 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 || || || ||| || || || || || || |||||||| || || || | | Sbjct 148797 GGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGAT 148738 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT---GTACGTCTTTGCCCAGGTC 48630 ||| || ||||| | || || | ||||| | || | | ||| | |||||| Sbjct 148737 GAAGTGTTTCTCGTCGGCCGTTAG-GGATTCC--CACTGGCGGATGTCCTGCGACAGGTC 148681 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGG 48690 || || ||| | ||||| || || || ||||| |||||||| |||| || ||||| Sbjct 148680 GACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCAGATTTCCGG 148621 Query 48691 ATA 48693 || Sbjct 148620 GTA 148618 >seq3895 Length=609050 Score = 104 bits (114), Expect = 4e-17 Identities = 363/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || || || || ||| | | |||| ||||| Sbjct 437998 CAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGT 437939 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | ||| | || ||||||||| || || || ||| || ||||| Sbjct 437938 TAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAA 437879 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || |||||||| || |||||| | | ||||| |||||| | ||| Sbjct 437878 GAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC 437819 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | |||||| || ||||| || ||| || | |||||| ||||| Sbjct 437818 ---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGC 437762 Query 48367 CCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | ||||| ||||| || | | ||| | || || || ||| | Sbjct 437761 GTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGA 437705 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 437704 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTC 437645 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || || ||| || ||| || || ||||| ||| || || || | Sbjct 437644 GGCGACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 437586 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| || || || || | ||| || ||||| ||| || || | Sbjct 437585 AGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCT 437526 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| || || ||||| || | ||||| || ||||| | Sbjct 437525 CCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGG 437466 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 437465 CTTTCTTGTACATTTCCCAAAT 437444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931151674999040